diff --git a/inst/case_study/case_study_of_MAFF.R b/inst/case_study/case_study_of_MAFF.R index f08639f..85467b2 100644 --- a/inst/case_study/case_study_of_MAFF.R +++ b/inst/case_study/case_study_of_MAFF.R @@ -106,9 +106,6 @@ HepG2_MAFF_exclu_peaks_cofactor <- intersectPeakMatrix(user_peak_list_x = list(H methylation_profile_in_narrow_region = TRUE) cofactorReport(intersectPeakMatrix = HepG2_MAFF_exclu_peaks_cofactor, cobinding_threshold = 0.1) -HepG2_MAFF_exclu_peaks_cofactor_res <- intersectPeakMatrixResult(intersectPeakMatrix = HepG2_MAFF_exclu_peaks_cofactor, - return_intersection_matrix = TRUE, - return_methylation_profile = TRUE) ############### HepG2 exclusive MAFF targets (Figure 3B and C) ################################# ############### Identify MAFF motif in K562 NFE2 peaks (Supplementary Figure 5B) #####################