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environment.yml
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environment.yml
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name: s2me
channels:
- pytorch
- anaconda
- comet_ml
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
- conda-forge
- defaults
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/fastai/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/pytorch/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- absl-py=1.0.0=pyhd8ed1ab_0
- accimage=0.2.0=py38hed9865a_3
- aiohttp=3.7.4.post0=py38h7f8727e_2
- alsa-lib=1.2.6.1=h7f98852_0
- aom=3.4.0=h27087fc_1
- async-timeout=3.0.1=py_1000
- attr=2.5.1=h166bdaf_1
- attrs=21.4.0=pyhd8ed1ab_0
- autopep8=1.6.0=pyhd8ed1ab_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beartype=0.11.0=pyhd8ed1ab_0
- blas=1.0=mkl
- blinker=1.4=py_1
- bpemb=0.3.3=pyhd8ed1ab_0
- brotli=1.0.9=he6710b0_2
- brotlipy=0.7.0=py38h497a2fe_1001
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f8727e_0
- ca-certificates=2022.12.7=ha878542_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=4.2.4=pyhd8ed1ab_0
- cairo=1.16.0=ha61ee94_1013
- cffi=1.15.0=py38hd667e15_1
- chardet=4.0.0=py38h578d9bd_2
- charset-normalizer=2.0.10=pyhd8ed1ab_0
- click=8.0.3=py38h578d9bd_1
- cloudpickle=2.2.0=pyhd8ed1ab_0
- colorama=0.4.4=pyh9f0ad1d_0
- comet-git-pure=0.19.16=py_0
- configobj=5.0.6=py38_1
- cryptography=35.0.0=py38ha5dfef3_0
- cudatoolkit=11.3.1=h9edb442_10
- cycler=0.11.0=pyhd3eb1b0_0
- cytoolz=0.12.0=py38h0a891b7_0
- dask-core=2022.9.1=pyhd8ed1ab_0
- dataclasses=0.8=pyhc8e2a94_3
- dbus=1.13.18=hb2f20db_0
- debugpy=1.5.1=py38h295c915_0
- decorator=5.1.1=pyhd8ed1ab_0
- docopt=0.6.2=py38h06a4308_0
- entrypoints=0.4=pyhd8ed1ab_0
- enum34=1.1.10=py38h32f6830_2
- everett=3.0.0=pyhd8ed1ab_0
- expat=2.4.8=h27087fc_0
- ffmpeg=4.4.2=gpl_hfe78399_107
- fftw=3.3.8=nompi_hfc0cae8_1114
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.0=hc2a2eb6_1
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.25.0=pyhd3eb1b0_0
- freeglut=3.2.2=h9c3ff4c_1
- freetype=2.12.1=hca18f0e_0
- fsspec=2022.8.2=pyhd8ed1ab_0
- gensim=4.3.0=py38hdc8b05c_1
- geos=3.11.0=h27087fc_0
- gettext=0.19.8.1=h73d1719_1008
- giflib=5.2.1=h7b6447c_0
- glib=2.72.1=h6239696_0
- glib-tools=2.72.1=h6239696_0
- gmp=6.2.1=h2531618_2
- gnutls=3.7.7=hf3e180e_0
- google-auth=2.3.3=pyh6c4a22f_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- graphite2=1.3.13=h58526e2_1001
- grpcio=1.42.0=py38hce63b2e_0
- gst-plugins-base=1.20.3=hf6a322e_0
- gstreamer=1.20.3=hd4edc92_1
- h5py=3.7.0=nompi_py38h8afedcf_100
- harfbuzz=5.2.0=hf9f4e7c_0
- hdf5=1.12.1=h69dfa17_1
- icu=70.1=h27087fc_0
- idna=3.3=pyhd8ed1ab_0
- imagecodecs-lite=2019.12.3=py38h71d37f0_5
- imageio=2.22.0=pyhfa7a67d_0
- imgaug=0.4.0=pyhd8ed1ab_1
- importlib-metadata=4.10.1=py38h578d9bd_0
- importlib_metadata=1.5.0=py38_0
- intel-ipp=2019.1.144=h711154d_3
- intel-openmp=2021.4.0=h06a4308_3561
- ipykernel=6.9.0=py38he5a9106_0
- ipython=7.31.1=py38h578d9bd_0
- jack=1.9.18=h8c3723f_1002
- jasper=2.0.33=ha77e612_0
- jedi=0.18.1=py38h578d9bd_0
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- json-c=0.16=hc379101_0
- jsonschema=3.2.0=py_2
- jupyter_client=7.1.2=pyhd8ed1ab_0
- jupyter_core=4.9.1=py38h578d9bd_1
- keras=2.9.0=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.3.1=py38h2531618_0
- kornia=0.6.8=pyhd8ed1ab_0
- krb5=1.19.3=h3790be6_0
- lame=3.100=h7b6447c_0
- lazygit=0.34=ha770c72_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=12_linux64_mkl
- libcap=2.64=ha37c62d_0
- libcblas=3.9.0=12_linux64_mkl
- libclang=14.0.6=default_h2e3cab8_0
- libclang13=14.0.6=default_h3a83d3e_0
- libcups=2.3.3=h3e49a29_2
- libcurl=7.83.1=h7bff187_0
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.13=h166bdaf_0
- libdrm=2.4.113=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h7f98852_5
- libflac=1.3.4=h27087fc_0
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libglib=2.72.1=h2d90d5f_0
- libglu=9.0.0=he1b5a44_1001
- libgomp=12.1.0=h8d9b700_16
- libiconv=1.16=h516909a_0
- libidn2=2.3.2=h7f8727e_0
- libjpeg-turbo=2.1.1=h7f98852_0
- liblapack=3.9.0=12_linux64_mkl
- liblapacke=3.9.0=12_linux64_mkl
- libllvm11=11.1.0=hf817b99_2
- libllvm14=14.0.6=he0ac6c6_0
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopencv=4.6.0=py38hadd57a7_2
- libopus=1.3.1=h7f98852_1
- libpciaccess=0.16=h516909a_0
- libpng=1.6.37=hbc83047_0
- libpq=14.5=hd77ab85_0
- libprotobuf=3.20.1=h6239696_4
- libsndfile=1.0.31=h9c3ff4c_1
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.39.3=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.1.0=ha89aaad_16
- libtasn1=4.19.0=h166bdaf_0
- libtiff=4.4.0=h0e0dad5_3
- libtool=2.4.6=h9c3ff4c_1008
- libunistring=0.9.10=h27cfd23_0
- libuuid=2.32.1=h7f98852_1000
- libuv=1.40.0=h7b6447c_0
- libva=2.15.0=h166bdaf_0
- libvorbis=1.3.7=h9c3ff4c_0
- libvpx=1.11.0=h9c3ff4c_3
- libwebp=1.2.4=h522a892_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.14=h22db469_4
- libzlib=1.2.12=h166bdaf_3
- llvmlite=0.38.0=py38h4ff587b_0
- locket=1.0.0=pyhd8ed1ab_0
- lz4-c=1.9.3=h295c915_1
- markdown=3.3.6=pyhd8ed1ab_0
- matplotlib=3.5.0=py38h06a4308_0
- matplotlib-base=3.5.0=py38h3ed280b_0
- matplotlib-inline=0.1.3=pyhd8ed1ab_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h7f8727e_0
- mkl_fft=1.3.1=py38hd3c417c_0
- mkl_random=1.2.2=py38h51133e4_0
- multidict=5.2.0=py38h7f8727e_2
- munkres=1.1.4=py_0
- mysql-common=8.0.30=haf5c9bc_1
- mysql-libs=8.0.30=h28c427c_1
- ncurses=6.3=h7f8727e_2
- nest-asyncio=1.5.4=pyhd8ed1ab_0
- netifaces=0.10.9=py38h497a2fe_1003
- nettle=3.8.1=hc379101_1
- networkx=2.8.6=pyhd8ed1ab_0
- nspr=4.32=h9c3ff4c_1
- nss=3.78=h2350873_0
- numba=0.55.1=py38h51133e4_0
- numpy=1.21.2=py38h20f2e39_0
- numpy-base=1.21.2=py38h79a1101_0
- nvidia-ml=7.352.0=py_0
- oauthlib=3.1.1=pyhd8ed1ab_0
- olefile=0.46=pyhd3eb1b0_0
- opencv=4.6.0=py38h578d9bd_2
- openh264=2.3.0=h27087fc_0
- openssl=1.1.1s=h0b41bf4_1
- p11-kit=0.24.1=hc5aa10d_0
- packaging=21.3=pyhd3eb1b0_0
- parso=0.8.3=pyhd8ed1ab_0
- partd=1.3.0=pyhd8ed1ab_0
- pathlib=1.0.1=py38h578d9bd_6
- pcre=8.45=h295c915_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=8.4.0=py38h5aabda8_0
- pip=21.2.4=py38h06a4308_0
- pixman=0.40.0=h36c2ea0_0
- ply=3.11=py_1
- portaudio=19.6.0=h57a0ea0_5
- prompt-toolkit=3.0.27=pyha770c72_0
- protobuf=3.20.1=py38hfa26641_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio=14.0=h583eb01_5
- py-opencv=4.6.0=py38h7f3c49e_2
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycodestyle=2.8.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.11.2=pyhd8ed1ab_0
- pyjwt=2.3.0=pyhd8ed1ab_1
- pyopenssl=21.0.0=pyhd8ed1ab_0
- pyparsing=3.0.4=pyhd3eb1b0_0
- pyqt=5.15.7=py38h7492b6b_0
- pyqt5-sip=12.11.0=py38hfa26641_0
- pyrsistent=0.17.3=py38h7b6447c_0
- pysocks=1.7.1=py38h578d9bd_4
- python=3.8.13=h582c2e5_0_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytorch=1.10.1=py3.8_cuda11.3_cudnn8.2.0_0
- pytorch-mutex=1.0=cuda
- pyu2f=0.1.5=pyhd8ed1ab_0
- pywavelets=1.3.0=py38h71d37f0_1
- pyyaml=6.0=py38h0a891b7_4
- pyzmq=19.0.2=py38ha71036d_2
- qt-main=5.15.4=ha5833f6_2
- readline=8.1.2=h7f8727e_1
- requests=2.27.1=pyhd8ed1ab_0
- requests-oauthlib=1.3.0=pyh9f0ad1d_0
- rsa=4.8=pyhd8ed1ab_0
- scikit-learn=0.23.2=py38h5d63f67_3
- scipy=1.7.3=py38hc147768_0
- sentencepiece=0.1.96=py38h43d8883_1
- setproctitle=1.2.2=py38h497a2fe_0
- setuptools=58.0.4=py38h06a4308_0
- shapely=1.8.4=py38h3b45516_0
- sip=6.6.2=py38hfa26641_0
- six=1.16.0=pyhd3eb1b0_0
- smart_open=6.3.0=pyha770c72_0
- sqlite=3.39.3=h4ff8645_0
- svt-av1=1.2.1=h27087fc_0
- tbb=2021.5.0=hd09550d_0
- tensorboard=2.7.0=pyhd8ed1ab_0
- tensorboard-data-server=0.6.0=py38h2b97feb_0
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- tensorboardx=2.2=pyhd3eb1b0_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tifffile=2019.7.26.2=py38_0
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- torchaudio=0.10.1=py38_cu113
- torchinfo=1.7.1=pyhd8ed1ab_0
- torchvision=0.11.2=py38_cu113
- tornado=6.1=py38h27cfd23_0
- tqdm=4.62.3=pyhd3eb1b0_1
- traitlets=5.1.1=pyhd8ed1ab_0
- typing-extensions=3.10.0.2=hd3eb1b0_0
- typing_extensions=3.10.0.2=pyh06a4308_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- websocket-client=0.57.0=py38_2
- werkzeug=2.0.2=pyhd8ed1ab_0
- wrapt=1.12.1=py38h7b6447c_1
- wurlitzer=2.0.1=py38_0
- x264=1!164.3095=h166bdaf_2
- x265=3.5=h924138e_3
- xcb-util=0.4.0=h166bdaf_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h166bdaf_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h166bdaf_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h7f98852_2
- yarl=1.6.3=py38h497a2fe_2
- zeromq=4.3.4=h9c3ff4c_0
- zipp=3.7.0=pyhd8ed1ab_0
- zlib=1.2.12=h166bdaf_3
- zstd=1.5.2=h6239696_4
- pip:
- albumentations==1.1.0
- apex==0.1
- aquarel==0.0.4
- arrow==1.2.2
- binaryornot==0.4.4
- blessed==1.19.1
- certifi==2022.12.7
- comet-ml==3.32.1
- contextlib2==21.6.0
- cookiecutter==2.1.1
- core-pytorch-utils==1.0.4
- cupy-cuda11x==11.1.0
- dulwich==0.21.2
- easydict==1.9
- efficientnet-pytorch==0.7.1
- einops==0.4.1
- et-xmlfile==1.1.0
- evalutils==0.3.1
- fastrlock==0.8
- google-api-core==2.8.2
- google-api-python-client==2.58.0
- google-auth-httplib2==0.1.0
- googleapis-common-protos==1.56.4
- hausdorff==0.2.6
- httplib2==0.20.4
- jinja2==3.1.2
- jinja2-time==0.2.0
- markupsafe==2.1.1
- medpy==0.4.0
- ml-collections==0.1.1
- monai==0.9.1
- munch==2.5.0
- nibabel==5.0.0
- ninja==1.11.1
- nvidia-ml-py==11.470.66
- nvitop==0.9.0
- oauth2client==4.1.3
- opencv-python==4.5.5.62
- opencv-python-headless==4.5.5.64
- openpyxl==3.0.10
- pandas==1.3.5
- pretrainedmodels==0.7.4
- prettytable==3.2.0
- psutil==5.9.2
- ptflops==0.6.9
- pydrive==1.3.1
- python-box==6.1.0
- python-slugify==6.1.2
- pytorch-ignite==0.2.0
- pytz==2021.3
- qudida==0.0.4
- randaugment==1.0.2
- requests-toolbelt==0.10.1
- scienceplots==1.0.9
- scikit-image==0.19.2
- segmentation-models-pytorch==0.3.1
- semantic-version==2.10.0
- sentry-sdk==1.15.0
- simpleitk==2.0.0
- simplejson==3.18.3
- tabulate==0.9.0
- text-unidecode==1.3
- thop==0.0.31-2005241907
- timm==0.4.12
- torch-tb-profiler==0.3.1
- torchfile==0.1.0
- torchmetrics==0.9.3
- torchsampler==0.1.2
- ttach==0.0.3
- uritemplate==4.1.1
- urllib3==1.26.14
- wheel==0.38.4
- yacs==0.1.8
prefix: /home/xxx/miniconda3/envs/s2me