diff --git a/docs/api.rst b/docs/api.rst
index c4b7c59..ffd854a 100644
--- a/docs/api.rst
+++ b/docs/api.rst
@@ -1,7 +1,42 @@
 API Reference
 ============
 
-.. automodule:: just_agents
+Core
+----
+
+.. automodule:: just_agents.core
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Tools
+-----
+
+.. automodule:: just_agents.tools
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Coding
+------
+
+.. automodule:: just_agents.coding
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Web
+---
+
+.. automodule:: just_agents.web
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+Router
+------
+
+.. automodule:: just_agents.router
    :members:
    :undoc-members:
    :show-inheritance: 
\ No newline at end of file
diff --git a/docs/conf.py b/docs/conf.py
index 5cb3eb6..f3991b2 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -10,7 +10,8 @@
     'sphinx.ext.napoleon',
     'sphinx.ext.viewcode',
     'myst_parser',
-    'sphinx.ext.intersphinx'
+    'sphinx.ext.intersphinx',
+    'sphinx_autodoc_typehints'
 ]
 
 # Add after the existing extensions
@@ -45,4 +46,10 @@
 # Intersphinx mapping
 intersphinx_mapping = {
     'python': ('https://docs.python.org/3', None),
-}
\ No newline at end of file
+}
+
+# Enable markdown parsing with MyST
+myst_enable_extensions = [
+    "colon_fence",
+    "deflist"
+]
\ No newline at end of file
diff --git a/docs/index.rst b/docs/index.rst
index ff7c6d6..dbf4df4 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -6,6 +6,7 @@ Welcome to just-agents documentation!
    :caption: Contents:
 
    readme
+   subprojects
    api
    examples
 
diff --git a/docs/requirements.txt b/docs/requirements.txt
index 290321b..0b80f18 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -1,4 +1,6 @@
 sphinx>=7.0.0
 sphinx-rtd-theme>=1.3.0
 myst-parser>=2.0.0
-sphinx-autodoc-typehints>=1.25.2
\ No newline at end of file
+sphinx-markdown-tables>=0.0.17
+sphinx-autodoc-typehints>=1.25.2
+sphinx-autoapi>=3.0.0
\ No newline at end of file
diff --git a/docs/subprojects.rst b/docs/subprojects.rst
new file mode 100644
index 0000000..12febc9
--- /dev/null
+++ b/docs/subprojects.rst
@@ -0,0 +1,32 @@
+Subprojects
+===========
+
+Core
+----
+.. include:: ../core/README.md
+   :parser: myst_parser.sphinx_
+
+Tools
+-----
+.. include:: ../tools/README.md
+   :parser: myst_parser.sphinx_
+
+Coding
+------
+.. include:: ../coding/README.md
+   :parser: myst_parser.sphinx_
+
+Web
+---
+.. include:: ../web/README.md
+   :parser: myst_parser.sphinx_
+
+Router
+------
+.. include:: ../router/README.md
+   :parser: myst_parser.sphinx_
+
+Examples
+--------
+.. include:: ../examples/README.md
+   :parser: myst_parser.sphinx_ 
\ No newline at end of file
diff --git a/tests/test_chain_of_thought.py b/tests/test_chain_of_thought.py
index 26d4eeb..25ee4fb 100644
--- a/tests/test_chain_of_thought.py
+++ b/tests/test_chain_of_thought.py
@@ -15,7 +15,7 @@ def count_letters(character: str, word: str) -> str:
 def test_function_query():
     load_dotenv(override = True)
 
-    llm_options = just_agents.llm_options.OPENAI_O1_MINI
+    llm_options = just_agents.llm_options.OPENAI_GPT4oMINI
     agent: ChainOfThoughtAgent = ChainOfThoughtAgent(llm_options=llm_options, tools=[count_letters])
     result, thoughts = agent.think("Count the number of occurrences of the letter 'L' in the word - 'LOLLAPALOOZA'.")
     print("Thoughts: ", thoughts)