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@lozuponelab

Lozupone Lab

We combine bioinformatics and experimental work to understand the driving factors of human microbiota composition in health and disease.​

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  1. SCNIC SCNIC Public

    Sparse Cooccurence Network Investigation for Compositional data

    Python 23 12

  2. AMON AMON Public

    Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

    Python 21 11

  3. q2-SCNIC q2-SCNIC Public

    A QIIME2 plugin for running SCNIC

    Python 4 7

  4. Source_of_Fecal_and_Oral_Bacteria_on_Hands Source_of_Fecal_and_Oral_Bacteria_on_Hands Public

    A repository containing data, methods and results for the manuscript The Prevalence and Source of Fecal and Oral Bacteria on Infant, Child and Adult Hands.

    Jupyter Notebook 1

  5. knowledge-source-mappings knowledge-source-mappings Public

    R 1 1

  6. KEGG_parser KEGG_parser Public

    KEGG Parsers, extracted and refactored

    Python

Repositories

Showing 8 of 8 repositories
  • SCNIC Public

    Sparse Cooccurence Network Investigation for Compositional data

    lozuponelab/SCNIC’s past year of commit activity
    Python 23 BSD-3-Clause 12 3 0 Updated Oct 31, 2024
  • AMON Public

    Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

    lozuponelab/AMON’s past year of commit activity
    Python 21 MIT 11 6 0 Updated Apr 16, 2024
  • knowledge-source-mappings Public
    lozuponelab/knowledge-source-mappings’s past year of commit activity
    R 1 1 0 1 Updated Mar 1, 2024
  • KEGG_parser Public

    KEGG Parsers, extracted and refactored

    lozuponelab/KEGG_parser’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Feb 5, 2024
  • q2-SCNIC Public

    A QIIME2 plugin for running SCNIC

    lozuponelab/q2-SCNIC’s past year of commit activity
    Python 4 BSD-3-Clause 7 10 1 Updated Nov 27, 2023
  • seq-helper-scripts Public

    Helper scripts for working with sequencing data (16S, MetaG, or MetaT)

    lozuponelab/seq-helper-scripts’s past year of commit activity
    Python 0 0 0 0 Updated Sep 6, 2023
  • q2-amon Public

    Qiime 2 plugin for AMON

    lozuponelab/q2-amon’s past year of commit activity
    0 MIT 0 0 0 Updated Sep 30, 2020
  • Source_of_Fecal_and_Oral_Bacteria_on_Hands Public

    A repository containing data, methods and results for the manuscript The Prevalence and Source of Fecal and Oral Bacteria on Infant, Child and Adult Hands.

    lozuponelab/Source_of_Fecal_and_Oral_Bacteria_on_Hands’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Dec 22, 2017

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