magnuspalmblad

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Magnus Palmblad magnuspalmblad

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Associate Professor and Head of Bioinformatics at the LUMC Center for Proteomics and Metabolomics

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Leiden University Medical Center
Leiden, the Netherlands
https://cpm.lumc.nl/bioinformatics/
@magnuspalmblad
@magnuspalmblad@fediscience.org
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magnuspalmblad/README.md

Hi 👋, I'm Magnus Palmblad

A researcher in bioinformatics, computational proteomics and mass spectrometry

🔭 I’m currently working on a range of machine learning projects in proteomics, workflow composition and dedicated, stand-alone, tools such as SCOPE, compareMS2 and mzRecal.
📝 I irregularly write articles on https://magnuspalmblad.github.io/
💬 Ask me about proteomics data analysis software
📫 How to reach me n.m.palmblad@lumc.nl

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NGP NGP Public

This is a collection of single-molecule, next-generation proteomics (NGP) simulation and analysis algorithms.

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Refactored-FastPaSS Refactored-FastPaSS Public

Forked from cmulders/Refactored-FastPaSS

FastPaSS is an GPU accerelated spectral library search tool. This version is a rewrite of the original code published by Baumgardner.

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compareMS2 compareMS2 Public

compareMS2 provides a pairwise global comparison between LC-MS/MS datasets based on similarity between the tandem mass spectra. Applications include molecular phylogenetics, quality control, pathog…

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EuropePMC2ChEBI EuropePMC2ChEBI Public

KNIME workflow for extracting ChEBI annotations from a Europe PMC literature search

R 2 2
ChEBI2Plot ChEBI2Plot Public

Forked from ReinV/SCOPE

Python 2
mzXML2stl mzXML2stl Public

Coverter between mzXML and STL format, e.g. for 3D printing LC-MS data

C 2 1