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Rediscovering
🎯
Rediscovering
21 followers · 2 following

Achievements

Achievement: QuickdrawAchievement: Pull Sharkx2

Achievements

Achievement: QuickdrawAchievement: Pull Sharkx2

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@EnviroSCALE @KoslickiLab

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mahmudhera/README.md
  • 👋 Hi, I’m @mahmudhera
  • 👀 I’m interested in computational biology and bioinformatics, but my expertise is in modeling problems using mathematics, and solving them using algorithms. I come from a computer science background, and love to connect CS knowledge with biological problems and applications.
  • 🌱 I’m currently working in KoslickiLab (https://koslickilab.github.io/Koslicki-lab-PSU/)
  • 📫 How to reach me: mahmudhera93@gmail.com

Mahmudur's github stats

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  1. frac_kmc frac_kmc Public

    KMC modified to compute FMH sketches (hopefully)

    C++ 1

  2. KoslickiLab/fmh-funprofiler KoslickiLab/fmh-funprofiler Public

    A functional profiler for metagenomes using FracMinHash

    Python 13 1

  3. KoslickiLab/mutation-rate-ci-calculator KoslickiLab/mutation-rate-ci-calculator Public

    This software calculates a confidence interval for the mutation rate from a set of observed containment indices under a simple nucleotide mutation process.

    Python 7 1

  4. KoslickiLab/YACHT KoslickiLab/YACHT Public

    A mathematically characterized hypothesis test for organism presence/absence in a metagenome

    Python 29 7

  5. kRISP-mER kRISP-mER Public

    A tool to generate personalized guide RNAs for CRISPR without using a reference genome

    Python 3

  6. phylogenetic-tree-using-fracminhash phylogenetic-tree-using-fracminhash Public

    This repo can be thought of as a counterpart to Mashtree - which computes a tree based off of Mash distance. Instead, in this repo, we build a tree based off of FracMinHash distance.

    Roff 2 2