- 👋 Hi, I’m @mahmudhera
- 👀 I’m interested in computational biology and bioinformatics, but my expertise is in modeling problems using mathematics, and solving them using algorithms. I come from a computer science background, and love to connect CS knowledge with biological problems and applications.
- 🌱 I’m currently working in KoslickiLab (https://koslickilab.github.io/Koslicki-lab-PSU/)
- 📫 How to reach me: mahmudhera93@gmail.com
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KoslickiLab/fmh-funprofiler
KoslickiLab/fmh-funprofiler PublicA functional profiler for metagenomes using FracMinHash
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KoslickiLab/mutation-rate-ci-calculator
KoslickiLab/mutation-rate-ci-calculator PublicThis software calculates a confidence interval for the mutation rate from a set of observed containment indices under a simple nucleotide mutation process.
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KoslickiLab/YACHT
KoslickiLab/YACHT PublicA mathematically characterized hypothesis test for organism presence/absence in a metagenome
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phylogenetic-tree-using-fracminhash
phylogenetic-tree-using-fracminhash PublicThis repo can be thought of as a counterpart to Mashtree - which computes a tree based off of Mash distance. Instead, in this repo, we build a tree based off of FracMinHash distance.
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