Update SETUP.md based on OpenCon do-a-thon (#89)

This build is based on fffae41. This commit was created by the following Travis CI build and job: https://travis-ci.org/greenelab/manubot-rootstock/builds/303174174 https://travis-ci.org/greenelab/manubot-rootstock/jobs/303174175 [ci skip] The full commit message that triggered this build is copied below: Update SETUP.md based on OpenCon do-a-thon (#89) * Update SETUP.md based on OpenCon do-a-thon sparcopen/doathon#21 * git diff --color-words, not --word-diff * Specify no Windows support in SETUP.md #91 * Doc: conda env installs on macOS I installed the environment on macOS 10.12.6 on 2017-11-16 and ran `sh build/build.sh` successfully.
manubot · Nov 16, 2017 · 37076ad · 37076ad
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diff --git a/README.md b/README.md
@@ -15,4 +15,4 @@ This directory contains the following files, which are mostly ignored on the `ma
 ## Source
 
 The manuscripts in this directory were built from
-[`4274f35bf45294f6a7e354e38d38e2ad2c4288bd`](https://github.com/greenelab/manubot-rootstock/commit/4274f35bf45294f6a7e354e38d38e2ad2c4288bd).
+[`fffae41daf5ec4a7d607ab051de45f4ecd05ce4c`](https://github.com/greenelab/manubot-rootstock/commit/fffae41daf5ec4a7d607ab051de45f4ecd05ce4c).
diff --git a/index.html b/index.html
@@ -28,7 +28,7 @@
 <header>
 <h1 class="title">Manubot Rootstock: Manuscript Title</h1>
 </header>
-<p><small><em> This manuscript was automatically generated from <a href="https://github.com/greenelab/manubot-rootstock/tree/4274f35bf45294f6a7e354e38d38e2ad2c4288bd">greenelab/manubot-rootstock@4274f35</a> on November 16, 2017. </em></small></p>
+<p><small><em> This manuscript was automatically generated from <a href="https://github.com/greenelab/manubot-rootstock/tree/fffae41daf5ec4a7d607ab051de45f4ecd05ce4c">greenelab/manubot-rootstock@fffae41</a> on November 16, 2017. </em></small></p>
 <h2 id="authors">Authors</h2>
 <ul>
 <li><p><strong>John Doe</strong><br> <img src="images/orcid.svg" alt="ORCID icon" width="13" height="13" /> <a href="https://orcid.org/XXXX-XXXX-XXXX-XXXX">XXXX-XXXX-XXXX-XXXX</a> · <img src="images/github.svg" alt="GitHub icon" width="13" height="13" /> <a href="https://github.com/johndoe">johndoe</a> · <img src="images/twitter.svg" alt="Twitter icon" width="13" height="13" /> <a href="https://twitter.com/johndoe">johndoe</a><br> <small> Department of Something, University of Whatever · Funded by Grant XXXXXXXX </small></p></li>

diff --git a/index.html.ots b/index.html.ots
diff --git a/manuscript.pdf b/manuscript.pdf
diff --git a/manuscript.pdf.ots b/manuscript.pdf.ots