Update SETUP.md based on OpenCon do-a-thon (#89)

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fffae41.

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Update SETUP.md based on OpenCon do-a-thon (#89)

* Update SETUP.md based on OpenCon do-a-thon

sparcopen/doathon#21

* git diff --color-words, not --word-diff

* Specify no Windows support in SETUP.md

#91

* Doc: conda env installs on macOS

I installed the environment on macOS 10.12.6 on 2017-11-16 and ran
`sh build/build.sh` successfully.

manuscript.html

@@ -28,7 +28,7 @@
 <header>
 <h1 class="title">Manubot Rootstock: Manuscript Title</h1>
 </header>
-<p><small><em> This manuscript was automatically generated from <a href="https://github.com/greenelab/manubot-rootstock/tree/4274f35bf45294f6a7e354e38d38e2ad2c4288bd">greenelab/manubot-rootstock@4274f35</a> on November 16, 2017. </em></small></p>
+<p><small><em> This manuscript was automatically generated from <a href="https://github.com/greenelab/manubot-rootstock/tree/fffae41daf5ec4a7d607ab051de45f4ecd05ce4c">greenelab/manubot-rootstock@fffae41</a> on November 16, 2017. </em></small></p>
 <h2 id="authors">Authors</h2>
 <ul>
 <li><p><strong>John Doe</strong><br> <img src="images/orcid.svg" alt="ORCID icon" width="13" height="13" /> <a href="https://orcid.org/XXXX-XXXX-XXXX-XXXX">XXXX-XXXX-XXXX-XXXX</a> · <img src="images/github.svg" alt="GitHub icon" width="13" height="13" /> <a href="https://github.com/johndoe">johndoe</a> · <img src="images/twitter.svg" alt="Twitter icon" width="13" height="13" /> <a href="https://twitter.com/johndoe">johndoe</a><br> <small> Department of Something, University of Whatever · Funded by Grant XXXXXXXX </small></p></li>

manuscript.md

@@ -18,7 +18,7 @@ title: 'Manubot Rootstock: Manuscript Title'
 
 <small><em>
 This manuscript was automatically generated
-from [greenelab/manubot-rootstock@4274f35](https://github.com/greenelab/manubot-rootstock/tree/4274f35bf45294f6a7e354e38d38e2ad2c4288bd)
+from [greenelab/manubot-rootstock@fffae41](https://github.com/greenelab/manubot-rootstock/tree/fffae41daf5ec4a7d607ab051de45f4ecd05ce4c)
 on November 16, 2017.
 </em></small>
 

variables.json

@@ -22,7 +22,7 @@
   ],
   "ci_source": {
     "repo_slug": "greenelab/manubot-rootstock",
-    "commit": "4274f35bf45294f6a7e354e38d38e2ad2c4288bd"
+    "commit": "fffae41daf5ec4a7d607ab051de45f4ecd05ce4c"
   },
   "manuscript_stats": {
     "reference_counts": {