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changelog.txt
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changelog.txt
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2.7.0
Merge gobyweb2.3 branch into master
Support for singularity
2.6.2 (Dec 27 1016)
Tolerate export's variable with a '%' in the value. More in general, if the transformation of the value fails (for whatever reason), the value is written unchanged in exports.sh.
Correct the condition that decides if we have to go for single or multiple resources installation.
Upgrade filesets, artifacts and protbuf dependencies.
Handle fileset with multiple files as result of an analisys execution.
Fix: Do not write variables in constants.sh if the value is null.
Fix: Remove broker parameters from FILESET_COMMAND variable.
2.5.4 (Sept 2015)
Introduce artifact-value option for resource installation.
Remove PLUGINS_ prefix to env variable names for resource files in the cluster simulator.
2.5.3 (Aug 28 2015)
Add test data and test cases for resource installation with a local artifact server.
Remove selection of java version from job scripts.
Update dependencies to the latest artifacts built for java 7.
Back to use explicit version for maven-parent because ivy does not know how to resolve LATEST.
2.5.2 (Aug 21 2015)
Do not consider disabled plugins during dependency resolution.
2.5.1 (Aug 17 2015)
Migration to java 7.
Make artifact-server optional.
2.5.0 (Jul 16 2015)
Add depend-on option. It allows to indicate execution dependencies among different submissions.
Integration with filesets library 1.3.1 to create metadata aggregation before executing tasks and analyses.
Add dieIfEmpty function to check if an empty variable requires to terminate the job.
2.4.0
Support analyses with a single group.
Integration with filesets library 1.2.0.
Publish a JOB METADATA fileset instance for each job successfully executed.
Introduce mandatory and optional artifacts for different job phases.
2.3.1 (Nov 22 2013)
Introduce PLUGIN_NEED_DEFAULT_JVM_OPTIONS variable for default JVM executions
Use JAVA_OPTS variable to set the amount of memory allocated to the groovy scripts.
Adjust OGE memory settings to run on standard.q
Expose PLUGIN_VERSION variable to all plugins
Default slots with no cardinality to 1 (both for minOccurs and maxOccurs).
Fix OGE script for remote task submission.
Select sun_jdk 6.0.25 distribution for task and resource installation on OGE.
2.3 (Sep 05 2013)
Simulate artifacts, needs and SDK environments in plugins-view-job-env
Create a map file in oge_job_script to make the OGE variables visible to NYoSh-based plugins
Refactor ClusterGatewaySimulator to be an also invoked as API
Fix additivity properties in Log4J configuration
2.2 (Jul 08 2013)
Add FileSet Browser
Add command for visualizing the job environment
Integration with FileSet library 1.1
2.1 (Jun 28 2013)
First release bundled as Plugins SDK
Add two new types of plugin: Task and FileSet
Submission of Aligners and Alignment Analyses as Jobs on OGE
Local and remote installation of Resources with artifacts
Local and remote submission of Tasks as Jobs
Registration/editing/unregistration of FileSet instances
Integration with FileSet library 1.0
Migration to BitBucket
2.0 (Apr 16 2013)
Support library for GobyWeb: load and validate plugin configurations
Supported plugin types: resource, aligner, alignment analysis
Split plugin.xsd in smaller schemas, one per each Plugin type
New class hierarchy for Configs