Update SSSOM Extended Prefix Map (#484)

This pull request updates sssom extended prefix map (epm). Make sure you run make tests manually. Co-authored-by: matentzn <matentzn@users.noreply.github.com>
mapping-commons · Jan 8, 2024 · 04508e9 · 04508e9
1 parent 43071d1
commit 04508e9
Showing 1 changed file with 40 additions and 2 deletions.
diff --git a/src/sssom/obo.epm.json b/src/sssom/obo.epm.json
@@ -4412,6 +4412,20 @@
             "https://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_"
         ]
     },
+    {
+        "prefix": "OCCO",
+        "prefix_synonyms": [
+            "occo"
+        ],
+        "uri_prefix": "http://purl.obolibrary.org/obo/OCCO_",
+        "uri_prefix_synonyms": [
+            "http://bioregistry.io/OCCO:",
+            "http://bioregistry.io/occo:",
+            "https://bioregistry.io/OCCO:",
+            "https://bioregistry.io/occo:",
+            "https://purl.obolibrary.org/obo/OCCO_"
+        ]
+    },
     {
         "pattern": "^\\d+$",
         "prefix": "OGG",
@@ -6874,6 +6888,15 @@
             "https://n2t.net/affy.probeset:"
         ]
     },
+    {
+        "prefix": "aftol.category",
+        "uri_prefix": "https://aftol.umn.edu/glossary?category=",
+        "uri_prefix_synonyms": [
+            "http://aftol.umn.edu/glossary?category=",
+            "http://bioregistry.io/aftol.category:",
+            "https://bioregistry.io/aftol.category:"
+        ]
+    },
     {
         "pattern": "^\\d+$",
         "prefix": "aftol.taxonomy",
@@ -9100,12 +9123,12 @@
     {
         "pattern": "^[0-9]+$",
         "prefix": "cellrepo",
-        "uri_prefix": "https://cellrepo.ico2s.org/repositories/",
+        "uri_prefix": "https://www.cellrepo.com/repositories/",
         "uri_prefix_synonyms": [
             "http://bioregistry.io/cellrepo:",
-            "http://cellrepo.ico2s.org/repositories/",
             "http://identifiers.org/cellrepo/",
             "http://identifiers.org/cellrepo:",
+            "http://www.cellrepo.com/repositories/",
             "https://bioregistry.io/cellrepo:",
             "https://identifiers.org/cellrepo/",
             "https://identifiers.org/cellrepo:"
@@ -13302,6 +13325,7 @@
         ]
     },
     {
+        "pattern": "^G[0-9]{5}[A-Z]{2}$",
         "prefix": "glygen",
         "uri_prefix": "https://glygen.org/glycan/",
         "uri_prefix_synonyms": [
@@ -14115,6 +14139,20 @@
             "https://bioregistry.io/hc.trial:"
         ]
     },
+    {
+        "pattern": "^.+$",
+        "prefix": "hco",
+        "uri_prefix": "http://biohackathon.org/resource/hco#",
+        "uri_prefix_synonyms": [
+            "http://bioregistry.io/hco:",
+            "http://identifiers.org/hco/",
+            "http://identifiers.org/hco:",
+            "https://biohackathon.org/resource/hco#",
+            "https://bioregistry.io/hco:",
+            "https://identifiers.org/hco/",
+            "https://identifiers.org/hco:"
+        ]
+    },
     {
         "prefix": "hcpcs",
         "uri_prefix": "http://purl.bioontology.org/ontology/HCPCS/",