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('.zip')" + } + ], + "tag": "base" +} \ No newline at end of file diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 42faaf7..c8e6468 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -41,7 +41,7 @@ jobs: sudo apt-get install graphviz python -V python -m pip install --upgrade pip - python -m pip install pydot pytest pytest-cov pytest-html rdflib ruff + python -m pip install benchman pydot pytest pytest-cov pytest-html rdflib ruff # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi python -m pip install -e . python -m pip list diff --git a/.gitignore b/.gitignore index 91ccb85..025e8dd 100644 --- a/.gitignore +++ b/.gitignore @@ -133,3 +133,4 @@ tests/test_dev_local*.py .DS_Store tests/temp/ .ruff_cache/ +/.benchman diff --git a/CHANGELOG.md b/CHANGELOG.md index b18c507..6071607 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,7 @@ # Changelog ## 0.11.2 (unreleased) +- Add benchmarks (using [Benchman](https://github.com/mar10/benchman)). ## 0.11.1 (2024-11-08) - `t0.diff(t1, ...)` adds nodes from t1 when possible, so the new status is diff --git a/Pipfile b/Pipfile index 3b97bb3..aeeca28 100644 --- a/Pipfile +++ b/Pipfile @@ -4,11 +4,12 @@ verify_ssl = true name = "pypi" [dev-packages] +benchman = "*" +# benchman = {file = "../benchman", editable = true} fabulist="*" ipykernel = "*" mypy = "*" notebook = "*" -# pandoc = "*" # jupyter nbconvert --to rst pre-commit = "*" pydot = "*" pyright = "*" diff --git a/Pipfile.lock b/Pipfile.lock index 1494023..2dbf28b 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "99e6aaf044d19c4a02b758f5427f6d4307858f216724432f61c3854f5e338d77" + "sha256": "3c7fadfe51dbc926b571479b19fd2a3fb9d4f6172608eca10cf0ec59140715ef" }, "pipfile-spec": 6, "requires": { @@ -37,11 +37,11 @@ }, "anyio": { "hashes": [ - "sha256:4c8bc31ccdb51c7f7bd251f51c609e038d63e34219b44aa86e47576389880b4c", - 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"sha256:1d61c0887fa860c01971625baae8bdd338e517b836a2f70dd1f7aa3a6b2fc5b5", + "sha256:b36993e92ca9375a219c99e606a122ff365a760a2d4bba0caa09bd5278b608b7" + ], + "markers": "python_version >= '3.8'", + "version": "==1.2.2.post1" + }, "cachetools": { "hashes": [ "sha256:02134e8439cdc2ffb62023ce1debca2944c3f289d66bb17ead3ab3dede74b292", @@ -151,11 +169,11 @@ }, "certifi": { "hashes": [ - "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8", - "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9" + "sha256:1275f7a45be9464efc1173084eaa30f866fe2e47d389406136d332ed4967ec56", + "sha256:b650d30f370c2b724812bee08008be0c4163b163ddaec3f2546c1caf65f191db" ], "markers": "python_version >= '3.6'", - "version": "==2024.8.30" + "version": "==2024.12.14" }, "cffi": { "hashes": [ @@ -248,122 +266,109 @@ }, "charset-normalizer": { "hashes": [ - "sha256:0099d79bdfcf5c1f0c2c72f91516702ebf8b0b8ddd8905f97a8aecf49712c621", - 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"sha256:e4a557d97f12813dc5e18dad9fa765ae44ddd56a672bb5de4825527c847d6379", + "sha256:e5ed16d95fd142e9c72b6c10b06514ad30e846a0d0917ab406186541fe68b451", + "sha256:e711fc1acc7468463bc084d1b68561e40d1eaa135d8c509a65dd534403d83d7b", + "sha256:f28b29dc158ca5d6ac396c8e0a2ef45c4e97bb7e65522bfc04c989e6fe814575", + "sha256:f335579a1b485c834849e9075191c9898e0731af45705c2ebf70e0cd5d58beed", + "sha256:fce6fee67c318fdfb7f285c29a82d84782ae2579c0e1b385b7f36c6e8074fffb", + "sha256:fd136bb85f4568fffca995bd3c8d52080b1e5b225dbf1c2b17b66b4c5fa02838" + ], + "markers": "python_version >= '3.8'", + "version": "==1.17.0" }, "yabs": { "hashes": [ @@ -2094,14 +2121,6 @@ ], "index": "pypi", "version": "==0.6.1" - }, - "zipp": { - "hashes": [ - "sha256:a817ac80d6cf4b23bf7f2828b7cabf326f15a001bea8b1f9b49631780ba28350", - "sha256:bc9eb26f4506fda01b81bcde0ca78103b6e62f991b381fec825435c836edbc29" - ], - "markers": "python_version >= '3.8'", - "version": "==3.20.2" } } } diff --git a/docs/jupyter/tutorial.ipynb b/docs/jupyter/tutorial.ipynb new file mode 100644 index 0000000..390428c --- /dev/null +++ b/docs/jupyter/tutorial.ipynb @@ -0,0 +1,310 @@ +{ + "cells": [ + { + "attachments": {}, + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Nutree Tutorial" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Nutree organizes arbitrary object instances in an unobtrusive way.
\n", + "That means, we can add existing objects without havin to derrive from a common \n", + "base class or having them implement a specific protocol." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Setup some sample classes and objects" + ] + }, + { + "cell_type": "code", + "execution_count": 31, + "metadata": {}, + "outputs": [], + "source": [ + "import uuid\n", + "\n", + "\n", + "class Department:\n", + " def __init__(self, name: str):\n", + " self.guid = uuid.uuid4()\n", + " self.name = name\n", + "\n", + " def __str__(self):\n", + " return f\"Department<{self.name}>\"\n", + "\n", + "\n", + "class Person:\n", + " def __init__(self, name: str, age: int):\n", + " self.guid = uuid.uuid4()\n", + " self.name = name\n", + " self.age = age\n", + "\n", + " def __str__(self):\n", + " return f\"Person<{self.name} ({self.age})>\"" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Now create some instances" + ] + }, + { + "cell_type": "code", + "execution_count": 32, + "metadata": {}, + "outputs": [], + "source": [ + "development_dep = Department(\"Development\")\n", + "test__dep = Department(\"Test\")\n", + "marketing_dep = Department(\"Marketing\")\n", + "\n", + "alice = Person(\"Alice\", 25)\n", + "bob = Person(\"Bob\", 35)\n", + "claire = Person(\"Claire\", 45)\n", + "dave = Person(\"Dave\", 55)" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Let's organize these objects in a hierarchical structure:" + ] + }, + { + "cell_type": "code", + "execution_count": 33, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Tree<'Organization'>\n", + "├── <__main__.Department object at 0x111f04e00>\n", + "│ ├── <__main__.Department object at 0x111b89f70>\n", + "│ │ ╰── <__main__.Person object at 0x111f05520>\n", + "│ ╰── <__main__.Person object at 0x111f04da0>\n", + "├── <__main__.Department object at 0x111edac90>\n", + "│ ╰── <__main__.Person object at 0x111f06a50>\n", + "╰── <__main__.Person object at 0x111ed9880>\n" + ] + } + ], + "source": [ + "from nutree import Tree\n", + "\n", + "tree = Tree(\"Organization\")\n", + "\n", + "dev_node = tree.add(development_dep)\n", + "test_node = dev_node.add(test__dep)\n", + "mkt_node = tree.add(marketing_dep)\n", + "\n", + "tree.add(alice)\n", + "dev_node.add(bob)\n", + "test_node.add(claire)\n", + "mkt_node.add(dave)\n", + "\n", + "tree.print()" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Tree nodes store a reference to the object in the `node.data` attribute.\n", + "\n", + "The nodes are formatted by the object's `__repr__` implementation by default.
\n", + "We can overide ths by passing an f-string as `repr` argument:" + ] + }, + { + "cell_type": "code", + "execution_count": 34, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Tree<'Organization'>\n", + "├── Department\n", + "│ ├── Department\n", + "│ │ ╰── Person\n", + "│ ╰── Person\n", + "├── Department\n", + "│ ╰── Person\n", + "╰── Person\n" + ] + } + ], + "source": [ + "tree.print(repr=\"{node.data}\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Iteration and Searching" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Mutation" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Data IDs and Clones" + ] + }, + { + "cell_type": "code", + "execution_count": 35, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Node<'Department', data_id=287245536>\n", + "├── Node<'Department', data_id=287017463>\n", + "│ ╰── Node<'Person', data_id=287245650>\n", + "╰── Node<'Person', data_id=287245530>\n", + "Node<'Department', data_id=287234761>\n", + "╰── Node<'Person', data_id=287245989>\n", + "Node<'Person', data_id=287234440>\n" + ] + } + ], + "source": [ + "tree.print(repr=\"{node}\", title=False)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Serialization" + ] + }, + { + "cell_type": "code", + "execution_count": 36, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "[{'data': 'Department',\n", + " 'children': [{'data': 'Department',\n", + " 'children': [{'data': 'Person'}]},\n", + " {'data': 'Person'}]},\n", + " {'data': 'Department',\n", + " 'children': [{'data': 'Person'}]},\n", + " {'data': 'Person'}]" + ] + }, + "execution_count": 36, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "tree.to_dict_list()" + ] + }, + { + "cell_type": "code", + "execution_count": 37, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "[(0, {}), (1, {}), (2, {}), (1, {}), (0, {}), (5, {}), (0, {})]" + ] + }, + "execution_count": 37, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "list(tree.to_list_iter())" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 38, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Tree<'4595934048'>\n", + "╰── 'A'\n" + ] + } + ], + "source": [ + "t = Tree._from_list([(0, \"A\")])\n", + "print(t.format())" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.6" + }, + "orig_nbformat": 4 + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/docs/sphinx/ug_benchmarks.md b/docs/sphinx/ug_benchmarks.md new file mode 100644 index 0000000..a06ab23 --- /dev/null +++ b/docs/sphinx/ug_benchmarks.md @@ -0,0 +1,157 @@ +# Benchmarks +## Benchmark Data + +> Client: arm64_16_GB, Darwin_24.1.0 + +| Full Name | Python | Minimum time | maxOPS | OPSrel | Std Dev (σ) | +|:--------------------------------------------------------|:-----------|:---------------|:----------|:----------|:--------------| +| access node.data(node._data (attr)) | 3.10.15 | 29 ns | 34.012 M | 34.012 M | 1 ns | +| access node.data(node._data (attr)) | 3.12.6 | 9 ns | 116.281 M | 116.281 M | 0 ns | +| access node.data(node._data (attr)) | 3.13.0rc3+ | 7 ns | 134.332 M | 134.332 M | 0 ns | +| access node.data(node._data (attr)) | 3.9.20 | 29 ns | 34.911 M | 34.911 M | 1 ns | +| access node.data(node._data (attr)) | 3.11.10 | 22 ns | 44.912 M | 44.912 M | 0 ns | +| access node.data(node.data (property)) | 3.9.20 | 75 ns | 13.334 M | 13.334 M | 0 ns | +| access node.data(node.data (property)) | 3.13.0rc3+ | 49 ns | 20.374 M | 20.374 M | 0 ns | +| access node.data(node.data (property)) | 3.12.6 | 52 ns | 19.222 M | 19.222 M | 0 ns | +| access node.data(node.data (property)) | 3.11.10 | 56 ns | 17.833 M | 17.833 M | 0 ns | +| access node.data(node.data (property)) | 3.10.15 | 79 ns | 12.616 M | 12.616 M | 0 ns | +| iterate(for _ in tree.iterator(): ..., n=8) | 3.10.15 | 2,563 ns | 0.390 M | 3.122 M | 6 ns | +| iterate(for _ in tree.iterator(): ..., n=8) | 3.12.6 | 1,666 ns | 0.600 M | 4.802 M | 53 ns | +| iterate(for _ in tree.iterator(): ..., n=8) | 3.13.0rc3+ | 1,508 ns | 0.663 M | 5.305 M | 6 ns | +| iterate(for _ in tree.iterator(): ..., n=8) | 3.11.10 | 2,138 ns | 0.468 M | 3.741 M | 223 ns | +| iterate(for _ in tree.iterator(): ..., n=8) | 3.9.20 | 2,639 ns | 0.379 M | 3.031 M | 12 ns | +| iterate(for _ in tree.iterator(LEVEL_ORDER): ..., n=8) | 3.13.0rc3+ | 1,222 ns | 0.818 M | 6.545 M | 3 ns | +| iterate(for _ in tree.iterator(LEVEL_ORDER): ..., n=8) | 3.10.15 | 1,908 ns | 0.524 M | 4.192 M | 9 ns | +| iterate(for _ in tree.iterator(LEVEL_ORDER): ..., n=8) | 3.12.6 | 1,309 ns | 0.764 M | 6.110 M | 4 ns | +| iterate(for _ in tree.iterator(LEVEL_ORDER): ..., n=8) | 3.11.10 | 1,552 ns | 0.644 M | 5.154 M | 4 ns | +| iterate(for _ in tree.iterator(LEVEL_ORDER): ..., n=8) | 3.9.20 | 1,776 ns | 0.563 M | 4.504 M | 6 ns | +| iterate(for _ in tree.iterator(POST_ORDER): ..., n=8) | 3.10.15 | 3,134 ns | 0.319 M | 2.553 M | 6 ns | +| iterate(for _ in tree.iterator(POST_ORDER): ..., n=8) | 3.12.6 | 2,292 ns | 0.436 M | 3.491 M | 7 ns | +| iterate(for _ in tree.iterator(POST_ORDER): ..., n=8) | 3.9.20 | 3,201 ns | 0.312 M | 2.500 M | 7 ns | +| iterate(for _ in tree.iterator(POST_ORDER): ..., n=8) | 3.11.10 | 2,667 ns | 0.375 M | 3.000 M | 10 ns | +| iterate(for _ in tree.iterator(POST_ORDER): ..., n=8) | 3.13.0rc3+ | 2,088 ns | 0.479 M | 3.831 M | 87 ns | +| iterate(for _ in tree.iterator(PRE_ORDER): ..., n=8) | 3.10.15 | 2,566 ns | 0.390 M | 3.118 M | 5 ns | +| iterate(for _ in tree.iterator(PRE_ORDER): ..., n=8) | 3.12.6 | 1,690 ns | 0.592 M | 4.735 M | 47 ns | +| iterate(for _ in tree.iterator(PRE_ORDER): ..., n=8) | 3.9.20 | 2,696 ns | 0.371 M | 2.968 M | 93 ns | +| iterate(for _ in tree.iterator(PRE_ORDER): ..., n=8) | 3.11.10 | 2,109 ns | 0.474 M | 3.794 M | 92 ns | +| iterate(for _ in tree.iterator(PRE_ORDER): ..., n=8) | 3.13.0rc3+ | 1,498 ns | 0.668 M | 5.341 M | 7 ns | +| iterate(for _ in tree.iterator(RANDOM_ORDER): ..., n=8) | 3.12.6 | 1,825 ns | 0.548 M | 4.383 M | 43 ns | +| iterate(for _ in tree.iterator(RANDOM_ORDER): ..., n=8) | 3.11.10 | 1,766 ns | 0.566 M | 4.529 M | 46 ns | +| iterate(for _ in tree.iterator(RANDOM_ORDER): ..., n=8) | 3.9.20 | 2,561 ns | 0.390 M | 3.123 M | 96 ns | +| iterate(for _ in tree.iterator(RANDOM_ORDER): ..., n=8) | 3.10.15 | 2,556 ns | 0.391 M | 3.130 M | 12 ns | +| iterate(for _ in tree.iterator(RANDOM_ORDER): ..., n=8) | 3.13.0rc3+ | 1,728 ns | 0.579 M | 4.629 M | 7 ns | +| iterate(for _ in tree.iterator(UNORDERED): ..., n=8) | 3.12.6 | 398 ns | 2.510 M | 20.080 M | 3 ns | +| iterate(for _ in tree.iterator(UNORDERED): ..., n=8) | 3.10.15 | 492 ns | 2.032 M | 16.256 M | 4 ns | +| iterate(for _ in tree.iterator(UNORDERED): ..., n=8) | 3.13.0rc3+ | 336 ns | 2.977 M | 23.819 M | 1 ns | +| iterate(for _ in tree.iterator(UNORDERED): ..., n=8) | 3.11.10 | 394 ns | 2.538 M | 20.301 M | 0 ns | +| iterate(for _ in tree.iterator(UNORDERED): ..., n=8) | 3.9.20 | 491 ns | 2.035 M | 16.283 M | 4 ns | +| iterate(for _ in tree: ..., n=8) | 3.9.20 | 2,652 ns | 0.377 M | 3.017 M | 21 ns | +| iterate(for _ in tree: ..., n=8) | 3.12.6 | 1,687 ns | 0.593 M | 4.741 M | 18 ns | +| iterate(for _ in tree: ..., n=8) | 3.13.0rc3+ | 1,527 ns | 0.655 M | 5.238 M | 107 ns | +| iterate(for _ in tree: ..., n=8) | 3.10.15 | 2,554 ns | 0.392 M | 3.133 M | 233 ns | +| iterate(for _ in tree: ..., n=8) | 3.11.10 | 2,157 ns | 0.464 M | 3.709 M | 4 ns | +| iterate(tree.visit(lambda node, memo: None), n=8) | 3.12.6 | 1,513 ns | 0.661 M | 5.286 M | 38 ns | +| iterate(tree.visit(lambda node, memo: None), n=8) | 3.11.10 | 1,998 ns | 0.501 M | 4.004 M | 7 ns | +| iterate(tree.visit(lambda node, memo: None), n=8) | 3.13.0rc3+ | 1,383 ns | 0.723 M | 5.785 M | 42 ns | +| iterate(tree.visit(lambda node, memo: None), n=8) | 3.10.15 | 2,595 ns | 0.385 M | 3.083 M | 88 ns | +| iterate(tree.visit(lambda node, memo: None), n=8) | 3.9.20 | 2,532 ns | 0.395 M | 3.159 M | 85 ns | +| search(by index, n=8) | 3.13.0rc3+ | 348 ns | 2.875 M | 23.004 M | 30 ns | +| search(by index, n=8) | 3.12.6 | 342 ns | 2.922 M | 23.375 M | 30 ns | +| search(by index, n=8) | 3.9.20 | 516 ns | 1.937 M | 15.497 M | 48 ns | +| search(by index, n=8) | 3.11.10 | 287 ns | 3.480 M | 27.839 M | 27 ns | +| search(by index, n=8) | 3.10.15 | 487 ns | 2.052 M | 16.415 M | 31 ns | +| search(find(), n=8) | 3.9.20 | 274 ns | 3.647 M | 29.175 M | 1 ns | +| search(find(), n=8) | 3.13.0rc3+ | 148 ns | 6.766 M | 54.127 M | 7 ns | +| search(find(), n=8) | 3.10.15 | 247 ns | 4.053 M | 32.422 M | 15 ns | +| search(find(), n=8) | 3.11.10 | 145 ns | 6.912 M | 55.299 M | 8 ns | +| search(find(), n=8) | 3.12.6 | 151 ns | 6.632 M | 53.056 M | 8 ns | +| search(find_all(), n=8) | 3.9.20 | 267 ns | 3.748 M | 29.980 M | 10 ns | +| search(find_all(), n=8) | 3.11.10 | 141 ns | 7.104 M | 56.832 M | 5 ns | +| search(find_all(), n=8) | 3.12.6 | 156 ns | 6.392 M | 51.134 M | 5 ns | +| search(find_all(), n=8) | 3.10.15 | 240 ns | 4.160 M | 33.278 M | 12 ns | +| search(find_all(), n=8) | 3.13.0rc3+ | 148 ns | 6.768 M | 54.147 M | 6 ns | +| serialize_load(ZIP_BZIP2 ('.bz2')) | 3.11.10 | 163 ms | 6.129 | 6.129 | 0 ms | +| serialize_load(ZIP_BZIP2 ('.bz2')) | 3.12.6 | 165 ms | 6.055 | 6.055 | 0 ms | +| serialize_load(ZIP_BZIP2 ('.bz2')) | 3.10.15 | 208 ms | 4.808 | 4.808 | 0 ms | +| serialize_load(ZIP_BZIP2 ('.bz2')) | 3.9.20 | 240 ms | 4.168 | 4.168 | 0 ms | +| serialize_load(ZIP_BZIP2 ('.bz2')) | 3.13.0rc3+ | 175 ms | 5.722 | 5.722 | 0 ms | +| serialize_load(ZIP_DEFLATED ('.zip')) | 3.11.10 | 148 ms | 6.756 | 6.756 | 0 ms | +| serialize_load(ZIP_DEFLATED ('.zip')) | 3.13.0rc3+ | 159 ms | 6.294 | 6.294 | 0 ms | +| serialize_load(ZIP_DEFLATED ('.zip')) | 3.12.6 | 164 ms | 6.102 | 6.102 | 0 ms | +| serialize_load(ZIP_DEFLATED ('.zip')) | 3.10.15 | 210 ms | 4.770 | 4.770 | 0 ms | +| serialize_load(ZIP_DEFLATED ('.zip')) | 3.9.20 | 209 ms | 4.785 | 4.785 | 0 ms | +| serialize_load(ZIP_LZMA ('.lzma')) | 3.10.15 | 208 ms | 4.805 | 4.805 | 0 ms | +| serialize_load(ZIP_LZMA ('.lzma')) | 3.9.20 | 204 ms | 4.907 | 4.907 | 0 ms | +| serialize_load(ZIP_LZMA ('.lzma')) | 3.13.0rc3+ | 156 ms | 6.424 | 6.424 | 0 ms | +| serialize_load(ZIP_LZMA ('.lzma')) | 3.11.10 | 162 ms | 6.187 | 6.187 | 0 ms | +| serialize_load(ZIP_LZMA ('.lzma')) | 3.12.6 | 167 ms | 5.975 | 5.975 | 0 ms | +| serialize_load(uncompressed ('.json')) | 3.13.0rc3+ | 149 ms | 6.709 | 6.709 | 0 ms | +| serialize_load(uncompressed ('.json')) | 3.9.20 | 203 ms | 4.926 | 4.926 | 0 ms | +| serialize_load(uncompressed ('.json')) | 3.12.6 | 171 ms | 5.848 | 5.848 | 0 ms | +| serialize_load(uncompressed ('.json')) | 3.11.10 | 145 ms | 6.902 | 6.902 | 0 ms | +| serialize_load(uncompressed ('.json')) | 3.10.15 | 200 ms | 4.990 | 4.990 | 0 ms | +| serialize_save(ZIP_BZIP2 ('.bz2')) | 3.12.6 | 325 ms | 3.081 | 3.081 | 0 ms | +| serialize_save(ZIP_BZIP2 ('.bz2')) | 3.11.10 | 320 ms | 3.125 | 3.125 | 0 ms | +| serialize_save(ZIP_BZIP2 ('.bz2')) | 3.13.0rc3+ | 281 ms | 3.558 | 3.558 | 0 ms | +| serialize_save(ZIP_BZIP2 ('.bz2')) | 3.10.15 | 378 ms | 2.649 | 2.649 | 0 ms | +| serialize_save(ZIP_BZIP2 ('.bz2')) | 3.9.20 | 353 ms | 2.835 | 2.835 | 0 ms | +| serialize_save(ZIP_DEFLATED ('.zip')) | 3.11.10 | 286 ms | 3.498 | 3.498 | 0 ms | +| serialize_save(ZIP_DEFLATED ('.zip')) | 3.13.0rc3+ | 244 ms | 4.091 | 4.091 | 0 ms | +| serialize_save(ZIP_DEFLATED ('.zip')) | 3.12.6 | 268 ms | 3.738 | 3.738 | 0 ms | +| serialize_save(ZIP_DEFLATED ('.zip')) | 3.9.20 | 333 ms | 3.000 | 3.000 | 0 ms | +| serialize_save(ZIP_DEFLATED ('.zip')) | 3.10.15 | 344 ms | 2.907 | 2.907 | 0 ms | +| serialize_save(ZIP_LZMA ('.lzma')) | 3.13.0rc3+ | 568 ms | 1.762 | 1.762 | 0 ms | +| serialize_save(ZIP_LZMA ('.lzma')) | 3.10.15 | 660 ms | 1.515 | 1.515 | 0 ms | +| serialize_save(ZIP_LZMA ('.lzma')) | 3.9.20 | 626 ms | 1.597 | 1.597 | 0 ms | +| serialize_save(ZIP_LZMA ('.lzma')) | 3.12.6 | 566 ms | 1.766 | 1.766 | 0 ms | +| serialize_save(ZIP_LZMA ('.lzma')) | 3.11.10 | 593 ms | 1.685 | 1.685 | 0 ms | +| serialize_save(uncompressed ('.json')) | 3.10.15 | 305 ms | 3.274 | 3.274 | 0 ms | +| serialize_save(uncompressed ('.json')) | 3.11.10 | 272 ms | 3.671 | 3.671 | 0 ms | +| serialize_save(uncompressed ('.json')) | 3.12.6 | 230 ms | 4.352 | 4.352 | 0 ms | +| serialize_save(uncompressed ('.json')) | 3.13.0rc3+ | 215 ms | 4.660 | 4.660 | 0 ms | +| serialize_save(uncompressed ('.json')) | 3.9.20 | 293 ms | 3.410 | 3.410 | 0 ms | + +Benchmark date: 2024-12-27T21:32:29.559992+00:00 +Fixed dataset values: client='61bdee7c56e0e5f7', debug_mode=False, hardware='arm64_16_GB', project='nutree', system='Darwin_24.1.0', tag='latest', version='0.11.2a1'. +Variant dataset values: name, python, sample_size, variant. +Showing 105 rows. +Sort order: full_name. + + + +## Ops by python + +> Client: arm64_16_GB, Darwin_24.1.0 + +| Name | Variant | 3.9.20 | 3.10.15 | 3.11.10 | 3.12.6 | 3.13.0rc3+ | +|:-----------------|:------------------------------------------|:---------|:----------|:----------|:----------|:-------------| +| access node.data | node._data (attr) | 34.911 M | 34.012 M | 44.912 M | 116.281 M | 134.332 M | +| access node.data | node.data (property) | 13.334 M | 12.616 M | 17.833 M | 19.222 M | 20.374 M | +| iterate | for _ in tree: ... | 0.377 M | 0.392 M | 0.464 M | 0.593 M | 0.655 M | +| iterate | for _ in tree.iterator(UNORDERED): ... | 2.035 M | 2.032 M | 2.538 M | 2.510 M | 2.977 M | +| iterate | for _ in tree.iterator(POST_ORDER): ... | 0.312 M | 0.319 M | 0.375 M | 0.436 M | 0.479 M | +| iterate | for _ in tree.iterator(RANDOM_ORDER): ... | 0.390 M | 0.391 M | 0.566 M | 0.548 M | 0.579 M | +| iterate | tree.visit(lambda node, memo: None) | 0.395 M | 0.385 M | 0.501 M | 0.661 M | 0.723 M | +| iterate | for _ in tree.iterator(LEVEL_ORDER): ... | 0.563 M | 0.524 M | 0.644 M | 0.764 M | 0.818 M | +| iterate | for _ in tree.iterator(PRE_ORDER): ... | 0.371 M | 0.390 M | 0.474 M | 0.592 M | 0.668 M | +| iterate | for _ in tree.iterator(): ... | 0.379 M | 0.390 M | 0.468 M | 0.600 M | 0.663 M | +| search | find_all() | 3.748 M | 4.160 M | 7.104 M | 6.392 M | 6.768 M | +| search | find() | 3.647 M | 4.053 M | 6.912 M | 6.632 M | 6.766 M | +| search | by index | 1.937 M | 2.052 M | 3.480 M | 2.922 M | 2.875 M | +| serialize_load | ZIP_LZMA ('.lzma') | 4.907 | 4.805 | 6.187 | 5.975 | 6.424 | +| serialize_load | uncompressed ('.json') | 4.926 | 4.990 | 6.902 | 5.848 | 6.709 | +| serialize_load | ZIP_DEFLATED ('.zip') | 4.785 | 4.770 | 6.756 | 6.102 | 6.294 | +| serialize_load | ZIP_BZIP2 ('.bz2') | 4.168 | 4.808 | 6.129 | 6.055 | 5.722 | +| serialize_save | ZIP_BZIP2 ('.bz2') | 2.835 | 2.649 | 3.125 | 3.081 | 3.558 | +| serialize_save | ZIP_DEFLATED ('.zip') | 3.000 | 2.907 | 3.498 | 3.738 | 4.091 | +| serialize_save | uncompressed ('.json') | 3.410 | 3.274 | 3.671 | 4.352 | 4.660 | +| serialize_save | ZIP_LZMA ('.lzma') | 1.597 | 1.515 | 1.685 | 1.766 | 1.762 | + +Benchmark date: 2024-12-27T21:32:29.559992+00:00 +Fixed dataset values: client='61bdee7c56e0e5f7', debug_mode=False, hardware='arm64_16_GB', project='nutree', system='Darwin_24.1.0', tag='latest', version='0.11.2a1'. +Variant dataset values: name, python, sample_size, variant. +: Showing 21 of 105 rows. +Sort order: name. + + + diff --git a/docs/sphinx/user_guide.rst b/docs/sphinx/user_guide.rst index fbf1e3f..c285047 100644 --- a/docs/sphinx/user_guide.rst +++ b/docs/sphinx/user_guide.rst @@ -26,3 +26,4 @@ capabilities of the library, if you haven't already. ug_graphs ug_randomize ug_advanced + ug_benchmarks.md diff --git a/nutree/common.py b/nutree/common.py index cc65229..42ac785 100644 --- a/nutree/common.py +++ b/nutree/common.py @@ -13,6 +13,7 @@ import sys import warnings import zipfile +from collections.abc import Iterator from contextlib import contextmanager from enum import Enum from pathlib import Path @@ -21,11 +22,7 @@ TYPE_CHECKING, Any, Callable, - Dict, - Iterator, - List, Literal, - Type, Union, ) @@ -129,17 +126,17 @@ def __init__(self, value=None): ReprArgType = Union[str, Callable[["Node"], str]] #: A dict of scalar values -FlatJsonDictType = Dict[str, Union[str, int, float, bool, None]] +FlatJsonDictType = dict[str, Union[str, int, float, bool, None]] #: Type of ``tree.save(..., key_map)`` -KeyMapType = Dict[str, str] +KeyMapType = dict[str, str] #: Type of ``tree.save(..., value_map)`` #: E.g. `{'t': ['person', 'dept']}` -ValueMapType = Dict[str, List[str]] +ValueMapType = dict[str, list[str]] #: E.g. `{'t': {'person': 0, 'dept': 1}}` -ValueDictMapType = Dict[str, Dict[str, int]] +ValueDictMapType = dict[str, dict[str, int]] #: Generic callback for `tree.to_dot()`, ... MapperCallbackType = Callable[["Node", dict], Union[None, Any]] @@ -152,7 +149,7 @@ def __init__(self, value=None): #: Generic callback for `tree.filter()`, `tree.copy()`, ... PredicateCallbackType = Callable[ - ["Node"], Union[None, bool, IterationControl, Type[IterationControl]] + ["Node"], Union[None, bool, IterationControl, type[IterationControl]] ] #: @@ -166,9 +163,9 @@ def __init__(self, value=None): bool, SkipBranch, StopTraversal, - Type[SkipBranch], - Type[StopTraversal], - Type[StopIteration], + type[SkipBranch], + type[StopTraversal], + type[StopIteration], ], ] #: Callback for `tree.sort(key=...)` diff --git a/nutree/dot.py b/nutree/dot.py index 7c0dc9a..c2b678d 100644 --- a/nutree/dot.py +++ b/nutree/dot.py @@ -7,8 +7,9 @@ from __future__ import annotations +from collections.abc import Iterator from pathlib import Path -from typing import IO, TYPE_CHECKING, Any, Iterator +from typing import IO, TYPE_CHECKING, Any from nutree.common import MapperCallbackType, call_mapper diff --git a/nutree/mermaid.py b/nutree/mermaid.py index 5d8d78b..b53695a 100644 --- a/nutree/mermaid.py +++ b/nutree/mermaid.py @@ -9,9 +9,10 @@ from __future__ import annotations import io +from collections.abc import Iterable, Iterator from pathlib import Path from subprocess import CalledProcessError, check_output -from typing import IO, TYPE_CHECKING, Callable, Iterable, Iterator, Literal +from typing import IO, TYPE_CHECKING, Callable, Literal from nutree.common import DataIdType diff --git a/nutree/node.py b/nutree/node.py index c83681c..07fbfd5 100644 --- a/nutree/node.py +++ b/nutree/node.py @@ -13,6 +13,7 @@ from __future__ import annotations import re +from collections.abc import Iterable, Iterator from operator import attrgetter from pathlib import Path from typing import ( @@ -20,8 +21,6 @@ TYPE_CHECKING, Any, Generic, - Iterable, - Iterator, cast, ) diff --git a/nutree/tree.py b/nutree/tree.py index 0eef9d8..2945fae 100644 --- a/nutree/tree.py +++ b/nutree/tree.py @@ -15,15 +15,13 @@ import json import random import threading +from collections.abc import Iterable, Iterator from pathlib import Path from typing import ( IO, Any, Generic, - Iterable, - Iterator, Literal, - Type, Union, cast, ) @@ -111,7 +109,7 @@ class Tree(Generic[TData, TNode]): **Note:** Use with care, see also :ref:`forward-attributes`. """ - node_factory: Type[TNode] = cast(Type[TNode], Node) + node_factory: type[TNode] = cast(type[TNode], Node) root_node_factory = _SystemRootNode #: Default connector prefixes ``format(style=...)`` argument. diff --git a/nutree/tree_generator.py b/nutree/tree_generator.py index 9aece65..73748c0 100644 --- a/nutree/tree_generator.py +++ b/nutree/tree_generator.py @@ -9,8 +9,9 @@ import random import sys from abc import ABC, abstractmethod +from collections.abc import Sequence from datetime import date, datetime, timedelta, timezone -from typing import Any, Sequence, Union +from typing import Any, Union from nutree.common import DictWrapper from nutree.node import Node diff --git a/nutree/typed_tree.py b/nutree/typed_tree.py index 6581f56..8925bf9 100644 --- a/nutree/typed_tree.py +++ b/nutree/typed_tree.py @@ -15,8 +15,9 @@ from __future__ import annotations from collections import Counter +from collections.abc import Iterator from pathlib import Path -from typing import IO, Iterator, Type, cast, final +from typing import IO, cast, final # typing.Self requires Python 3.11 from typing_extensions import Any, Self @@ -100,7 +101,7 @@ def __repr__(self) -> str: def kind(self) -> str: return self._kind - def get_children(self, kind: str | Type[ANY_KIND]) -> list[Self]: + def get_children(self, kind: str | type[ANY_KIND]) -> list[Self]: """Return list of direct child nodes of a given type (list may be empty).""" all_children = self._children if not all_children: @@ -109,7 +110,7 @@ def get_children(self, kind: str | Type[ANY_KIND]) -> list[Self]: return all_children return list(filter(lambda n: n._kind == kind, all_children)) - def first_child(self, kind: str | Type[ANY_KIND]) -> Self | None: + def first_child(self, kind: str | type[ANY_KIND]) -> Self | None: """First direct child node or None if no children exist.""" all_children = self._children if not all_children: @@ -122,7 +123,7 @@ def first_child(self, kind: str | Type[ANY_KIND]) -> Self | None: return n return None - def last_child(self, kind: str | Type[ANY_KIND]) -> Self | None: + def last_child(self, kind: str | type[ANY_KIND]) -> Self | None: """Last direct child node or None if no children exist.""" all_children = self._children if not all_children: @@ -136,7 +137,7 @@ def last_child(self, kind: str | Type[ANY_KIND]) -> Self | None: return n return None - def has_children(self, kind: str | Type[ANY_KIND]) -> bool: + def has_children(self, kind: str | type[ANY_KIND]) -> bool: """Return true if this node has one or more children.""" if kind is ANY_KIND: return bool(self._children) @@ -283,7 +284,7 @@ def add_child( source_node: Self = None # type: ignore new_node: Self = None # type: ignore - factory: Type[Self] = self._tree.node_factory # type: ignore + factory: type[Self] = self._tree.node_factory # type: ignore if isinstance(child, TypedNode): if deep is None: @@ -620,15 +621,15 @@ def add( node_id=node_id, ) - def first_child(self, kind: str | Type[ANY_KIND]) -> TypedNode[TData] | None: + def first_child(self, kind: str | type[ANY_KIND]) -> TypedNode[TData] | None: """Return the first toplevel node.""" return self.system_root.first_child(kind=kind) - def last_child(self, kind: str | Type[ANY_KIND]) -> TypedNode[TData] | None: + def last_child(self, kind: str | type[ANY_KIND]) -> TypedNode[TData] | None: """Return the last toplevel node.""" return self.system_root.last_child(kind=kind) - def iter_by_type(self, kind: str | Type[ANY_KIND]) -> Iterator[TypedNode[TData]]: + def iter_by_type(self, kind: str | type[ANY_KIND]) -> Iterator[TypedNode[TData]]: if kind == ANY_KIND: yield from self.iterator() for n in self.iterator(): diff --git a/pyproject.toml b/pyproject.toml index 5f48ed3..f2d9d03 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ # --- Ruff Settings ------------------------------------------------------------ [tool.ruff] -target-version = "py38" +target-version = "py39" src = ["nutree", "tests"] [tool.ruff.lint] @@ -68,6 +68,12 @@ ignore_missing_imports = true addopts = "-ra -q --cov=nutree" # addopts = "--cov=nutree --cov-report=html --cov-report=term-missing" +markers = [ + "benchmarks: include slow benchmarks (enable with '-m benchmarks')", + # "slow: marks tests as slow (deselect with '-m \"not slow\"')", + # "serial", +] + [tool.coverage.run] # branch = true omit = [ @@ -97,6 +103,7 @@ exclude_also = [ # "\\A(?s:.*# pragma: exclude file.*)\\Z", "\\A(?s:.*# pragma: exclude-file-from-coverage.*)\\Z", ] + [tool.coverage.html] directory = "build/coverage" diff --git a/setup.cfg b/setup.cfg index 7589387..4aaf247 100644 --- a/setup.cfg +++ b/setup.cfg @@ -15,7 +15,8 @@ # "options": {}, [metadata] -# name = nutree # GitHub dependants needs it in setup.py? +# GitHub dependants needs name in setup.py? +name = nutree version = attr: nutree.__version__ author = Martin Wendt author_email = nutree@wwwendt.de diff --git a/setup.py b/setup.py index 6ac3a21..17654c9 100644 --- a/setup.py +++ b/setup.py @@ -2,6 +2,6 @@ from setuptools import setup setup( - name="nutree", # GitHub dependants needs it in setup.py? + # name="nutree", # GitHub dependants needs it in setup.py? # See setup.cfg ) diff --git a/tests/conftest.py b/tests/conftest.py index 626deb2..8e92e48 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,3 +1,12 @@ # see also pytest.ini +import pytest +from benchman import BenchmarkManager + + def pytest_addoption(parser): parser.addoption("--benchmarks", action="store_true") + + +@pytest.fixture(scope="session") +def benchman() -> BenchmarkManager: + return BenchmarkManager.singleton() diff --git a/tests/fixture.py b/tests/fixture.py index 3ef055c..d347df9 100644 --- a/tests/fixture.py +++ b/tests/fixture.py @@ -15,7 +15,7 @@ import uuid from random import randint from textwrap import dedent, indent -from typing import IO, Any, List +from typing import IO, Any from nutree.common import ReprArgType from nutree.tree import Node, Tree @@ -233,7 +233,7 @@ def create_typed_tree_simple( return tree -def generate_tree(level_defs: List[int]) -> Tree: +def generate_tree(level_defs: list[int]) -> Tree: """Generate a tree. Example: diff --git a/tests/pytest.ini b/tests/pytest.ini index aa0702b..d2ffdcb 100644 --- a/tests/pytest.ini +++ b/tests/pytest.ini @@ -10,9 +10,9 @@ junit_family = legacy # minversion = 6.0 # addopts = -ra -q -markers = - benchmarks: include slow benchmarks (enable with '-m benchmarks') - # slow: marks tests as slow (deselect with '-m "not slow"') - # serial +; markers = +; benchmarks: include slow benchmarks (enable with '-m benchmarks') +; # slow: marks tests as slow (deselect with '-m "not slow"') +; # serial \ No newline at end of file diff --git a/tests/test_bench.py b/tests/test_bench.py index ff19140..38911cc 100644 --- a/tests/test_bench.py +++ b/tests/test_bench.py @@ -5,7 +5,6 @@ # ruff: noqa: E501 Line too long import sys -from pathlib import Path import pytest from nutree import IterMethod @@ -20,147 +19,113 @@ @benchmark class TestBenchmarks: - def test_bench_index(self, capsys): + def test_bench_index(self, benchman, capsys): """ """ - results = ["Benchmark results"] - tree = fixture.create_tree_simple() - - results.append( - fixture.run_timings( - "access tree[key]", - """\ - _ = tree["a1"] - """, - globals=locals(), - time_unit="nsec", - ) + tree = fixture.create_tree_simple(print=False) + bmr = benchman.make_runner( + name="search", + sample_size=len(tree), + globals=locals(), ) - results.append( - fixture.run_timings( - "tree.find()", - """\ - _ = tree.find("a1") - """, - globals=locals(), - ) + bmr.run( + variant="by index", + stmt="""\ + _ = tree["a1"] + """, ) - - results.append( - fixture.run_timings( - "tree.find_all()", - """\ - _ = tree.find_all("a1") - """, - globals=locals(), - ) + bmr.run( + variant="find() ", + stmt="""\ + _ = tree.find("a1") + """, + ) + bmr.run( + variant="find_all() ", + stmt="""\ + _ = tree.find_all("a1") + """, ) with capsys.disabled(): - print("\n - ".join(results)) + bmr.print() - def test_bench_properties(self, capsys): + def test_bench_properties(self, benchman, capsys): """ """ - - results = ["Benchmark results"] tree = fixture.create_tree_simple() node = tree.first_child() + bmr = benchman.make_runner( + name="access node.data", + globals=locals(), + ) - results.append( - fixture.run_timings( - "access node.data (property)", - """\ - _ = node.data - """, - globals=locals(), - ) + bmr.run( + variant="node.data (property)", + stmt="""\ + _ = node.data + """, ) - results.append( - fixture.run_timings( - "access node._data (attribute)", - """\ - _ = node._data - """, - globals=locals(), - ) + bmr.run( + variant="node._data (attr)", + stmt="""\ + _ = node._data + """, ) with capsys.disabled(): - print("\n - ".join(results)) + bmr.print() - def test_bench_iter(self, capsys): + def test_bench_iter(self, benchman, capsys): """ """ - - results = ["Benchmark results"] tree = fixture.create_tree_simple() node = tree.first_child() - - results.append( - fixture.run_timings( - "for _ in tree: ...", - """\ - for _ in tree: pass - """, - globals=locals(), - ) + size = len(tree) + bmr = benchman.make_runner( + name="iterate", + sample_size=len(tree), + globals=locals(), ) - results.append( - fixture.run_timings( - "for _ in tree.iterator(): ...", - """\ - for _ in tree.iterator(): pass - """, - globals=locals(), - ) + bmr.run( + variant="for _ in tree: ...", + stmt="""\ + for _ in tree: pass + """, ) - ORDER = IterMethod.LEVEL_ORDER - results.append( - fixture.run_timings( - f"for _ in tree.iterator({ORDER}): ...", - """\ - for _ in tree.iterator(ORDER): pass - """, - globals=locals(), - ) + bmr.run( + variant="for _ in tree.iterator(): ...", + stmt="""\ + for _ in tree.iterator(): pass + """, ) - ORDER = IterMethod.RANDOM_ORDER - results.append( - fixture.run_timings( - f"for _ in tree.iterator({ORDER}): ...", - """\ - for _ in tree.iterator(ORDER): pass - """, - globals=locals(), - ) - ) - - ORDER = IterMethod.UNORDERED - results.append( - fixture.run_timings( - f"for _ in tree.iterator({ORDER}): ...", - """\ - for _ in tree.iterator(ORDER): pass - """, + ORDER_LIST = [ + IterMethod.LEVEL_ORDER, + IterMethod.PRE_ORDER, + IterMethod.POST_ORDER, + IterMethod.RANDOM_ORDER, + IterMethod.UNORDERED, + ] + for ORDER in ORDER_LIST: + bmr.run( + variant=f"for _ in tree.iterator({ORDER.name}): ...", + stmt="""\ + for _ in tree.iterator(ORDER): pass + """, globals=locals(), ) - ) - results.append( - fixture.run_timings( - "tree.visit(lambda node, memo: None)", - """\ - tree.visit(lambda node, memo: None) - """, - globals=locals(), - ) + bmr.run( + variant="tree.visit(lambda node, memo: None)", + stmt="""\ + tree.visit(lambda node, memo: None) + """, ) with capsys.disabled(): - print("\n - ".join(results)) + bmr.print() @benchmark @@ -176,118 +141,100 @@ class TestCompress: ZIP_LZMA ('.lzma') | 44.347 | 2.13 | 0.38 """ - def test_bench_serialize(self, capsys): + def test_bench_serialize(self, benchman, tmp_path, capsys): import zipfile # noqa: F401 - results = ["Benchmark results"] - directory = Path("~").expanduser() - # with WritableTempFile("w", suffix=".gz") as temp_file: + # directory = Path("~").expanduser() + directory = tmp_path tree = fixture.generate_tree([10, 100, 100]) + bmr_load = benchman.make_runner( + name="serialize_load", + # sample_size=len(tree), + repeat=1, + iterations=1, + globals=locals(), + ) + bmr_save = benchman.make_runner( + name="serialize_save", + # sample_size=len(tree), + repeat=1, + iterations=1, + globals=locals(), + ) + path = directory / "test.json" - results.append( - fixture.run_timings( - f"tree.save({path}, compression=False, nodes={len(tree):,})", - f"""\ + bmr_save.run( + variant="uncompressed ('.json')", + stmt=f"""\ tree.save("{path}", compression=False) - """, - repeat=1, - number=1, - globals=locals(), - ) + """, ) - results.append( - fixture.run_timings( - f"tree.load({path}, nodes={len(tree):,})", - f"""\ + + bmr_load.run( + variant="uncompressed ('.json')", + stmt=f"""\ tree.load("{path}") - """, - repeat=1, - number=1, - globals=locals(), - ) + """, ) + # --- ZIP path = directory / "test.zip" - results.append( - fixture.run_timings( - f"tree.save({path}, compression=ZIP, nodes={len(tree):,})", - f"""\ + bmr_save.run( + variant="ZIP_DEFLATED ('.zip') ", + stmt=f"""\ tree.save("{path}", compression=zipfile.ZIP_DEFLATED) - """, - repeat=1, - number=1, - globals=locals(), - ) + """, ) - results.append( - fixture.run_timings( - f"tree.load({path}, nodes={len(tree):,})", - f"""\ + + bmr_load.run( + variant="ZIP_DEFLATED ('.zip') ", + stmt=f"""\ tree.load("{path}") - """, - repeat=1, - number=1, - globals=locals(), - ) + """, ) + # --- ZIP path = directory / "test.bz2" - results.append( - fixture.run_timings( - f"tree.save({path}, compression=ZIP, nodes={len(tree):,})", - f"""\ + bmr_save.run( + variant="ZIP_BZIP2 ('.bz2') ", + stmt=f"""\ tree.save("{path}", compression=zipfile.ZIP_BZIP2) - """, - repeat=1, - number=1, - globals=locals(), - ) + """, ) - results.append( - fixture.run_timings( - f"tree.load({path}, nodes={len(tree):,})", - f"""\ + + bmr_load.run( + variant="ZIP_BZIP2 ('.bz2') ", + stmt=f"""\ tree.load("{path}") - """, - repeat=1, - number=1, - globals=locals(), - ) + """, ) + # --- ZIP path = directory / "test.lzma" - results.append( - fixture.run_timings( - f"tree.save({path}, compression=LZMA, nodes={len(tree):,})", - f"""\ + bmr_save.run( + variant="ZIP_LZMA ('.lzma') ", + stmt=f"""\ tree.save("{path}", compression=zipfile.ZIP_LZMA) - """, - repeat=1, - number=1, - globals=locals(), - ) + """, ) - results.append( - fixture.run_timings( - f"tree.load({path}, nodes={len(tree):,})", - f"""\ + + bmr_load.run( + variant="ZIP_LZMA ('.lzma') ", + stmt=f"""\ tree.load("{path}") - """, - repeat=1, - number=1, - globals=locals(), - ) + """, ) with capsys.disabled(): - print("\n - ".join(results)) + bmr_save.print() + bmr_load.print() @benchmark class TestMemory: - def test_bench_node_size(self, capsys): + def test_bench_node_size(self, benchman, capsys): """ """ try: @@ -323,7 +270,8 @@ def test_bench_node_size(self, capsys): f"node-size: {node_size:.1f} bytes" ) with capsys.disabled(): - print("\n - ".join(results)) + print(f"\n{benchman}") + benchman.print_results() # def test_bench_tree_mem(self, capsys): # """ """ diff --git a/tests/test_serialize.py b/tests/test_serialize.py index 53aec5c..e919281 100644 --- a/tests/test_serialize.py +++ b/tests/test_serialize.py @@ -11,7 +11,7 @@ import pprint import tempfile import zipfile -from typing import Any, Tuple +from typing import Any import pytest from nutree import Node, Tree @@ -21,7 +21,7 @@ from . import fixture -def _get_fp_result(fp, *, do_print=True, assert_len: int) -> Tuple[str, dict]: +def _get_fp_result(fp, *, do_print=True, assert_len: int) -> tuple[str, dict]: fp.seek(0) text = fp.read() data = json.loads(text) diff --git a/tests/test_typing_concept.py b/tests/test_typing_concept.py index b8c0812..908e9b8 100644 --- a/tests/test_typing_concept.py +++ b/tests/test_typing_concept.py @@ -6,7 +6,7 @@ from __future__ import annotations -from typing import Generic, List, Type, cast +from typing import Generic, cast from uuid import UUID, uuid4 from typing_extensions import Any, Self, TypeVar, reveal_type @@ -19,7 +19,7 @@ class Node(Generic[TData]): def __init__(self, data: TData, parent: Self): self.data: TData = data self.parent: Self = parent - self.children: List[Self] = [] + self.children: list[Self] = [] def add(self, data: TData) -> Self: node = self.__class__(data, self) @@ -28,7 +28,7 @@ def add(self, data: TData) -> Self: class Tree(Generic[TData, TNode]): - node_factory: Type[TNode] = cast(Type[TNode], Node) + node_factory: type[TNode] = cast(type[TNode], Node) def __init__(self): self._root: Node = self.node_factory("__root__", None) # type: ignore diff --git a/tox.ini b/tox.ini index d91fc8f..31e2902 100644 --- a/tox.ini +++ b/tox.ini @@ -17,13 +17,9 @@ skip_missing_interpreters = true # TOX Test Environment [testenv] -# usedevelop = True -extras = -# test -passenv = - # LC_ALL - # LANG -# Note: also honors .coveragerc: +; usedevelop = True +; extras = +; passenv = deps = fabulist pydot @@ -31,18 +27,12 @@ deps = pytest-cov pytest-html rdflib - py39: typing-extensions>=4.0 - py310: typing-extensions>=4.0 setenv = COVERAGE_FILE=.coverage.{envname} -; allowlist_externals = -; which commands = # See settings in pyproject.toml - # Run everything from /tests folder: python -V - ; which python - ; pip list + pip install -e ../benchman_pre pytest -ra -v -x --durations=10 --cov=nutree --html=build/pytest/report-{envname}.html --self-contained-html {posargs} [testenv:py38] @@ -130,16 +120,20 @@ commands = # http://www.sphinx-doc.org/en/master/man/sphinx-build.html sphinx-build -b html sphinx sphinx-build -[testenv:benchmarks] -description = Run 'pytest --benchmarks' on all Python versions -; envlist = py38, py39, py310, py311, py312 -skip_install = true -changedir = {toxinidir} -basepython = py312 -; basepython = py39 -; basepython = py{38, 39} +; [testenv:benchmarks] +; description = Run 'pytest --benchmarks' on all Python versions +; ; envlist = py38, py39, py310, py311, py312 +; skip_install = true +; changedir = {toxinidir} +; basepython = py312 +; ; basepython = py39 +; ; basepython = py{38, 39} ; deps = ; pytest -commands = - python -V - pytest -k test_bench -o addopts="" --benchmarks +; pytest-benchmark[histogram] +; commands = +; python -V +; ; pytest -k test_bench -o addopts="" --benchmarks +; ; pytest -o addopts="" -k test_pybench --benchmarks --benchmark-histogram +; pytest -o addopts="" -k test_pybench --benchmarks +; benchman purge diff --git a/tox_benchmarks.ini b/tox_benchmarks.ini new file mode 100644 index 0000000..d595ad1 --- /dev/null +++ b/tox_benchmarks.ini @@ -0,0 +1,44 @@ +[tox] +basepython = python3.12 +envlist = + py{39,310,311,312,313} + ; py{39} + benchman-combine +skip_missing_interpreters = true + + +# TOX Test Environment +[testenv] +; skip_install = true +deps = + ../benchman_pre + pytest + +changedir = {toxinidir} +commands = + python -V + pytest -v \ + -o addopts="" \ + --benchmarks tests/test_bench.py +; ignore_outcome = true +; parallel_show_output = true + + +[testenv:benchman-combine] +description = Combine benchmark results +# Make sure to run this last +depends = py{39,310,311,312,313} +; skip_install = true +changedir = {toxinidir} +commands: + benchman combine + benchman report + benchman report \ + --columns name,variant \ + --dyn-col-name python --dyn-col-value ops \ + --output .benchman/report-by-pyver.latest.md + ; benchman report --columns name,mean,median,stdev --dyn-col-name python --dyn-col-value best + benchman report --output .benchman/report.latest.md + +; ignore_outcome = true +; parallel_show_output = true \ No newline at end of file