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increase min split size to 15GB
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arangrhie committed Aug 6, 2020
1 parent 0299778 commit 27a15fc
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions _submit_build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -45,11 +45,11 @@ for i in $(seq 1 $LEN)
do
fq=`sed -n ${i}p $input_fofn`
GB=`du -k $fq | awk '{printf "%.0f", $1/1024/1024}'`
if [[ $GB -lt 12 ]]; then
echo "$fq is $GB, less than 12GB. Skip splitting."
if [[ $GB -lt 15 ]]; then
echo "$fq is $GB, less than 15GB. Skip splitting."
echo $fq >> $input_fofn.$i
else
echo "$fq is $GB, over 12GB. Will split and run meryl in parallel."
echo "$fq is $GB, over 15GB. Will split and run meryl in parallel."
echo "Split files will be in $input_fofn.$i"
args="$input_fofn"
split_arrs="$split_arrs$i,"
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