From 27a15fc2f42e6eab0889c36681af831f7f8209b2 Mon Sep 17 00:00:00 2001 From: arangrhie Date: Wed, 5 Aug 2020 22:03:44 -0400 Subject: [PATCH] increase min split size to 15GB --- _submit_build.sh | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/_submit_build.sh b/_submit_build.sh index 988e26d..e44a8b8 100755 --- a/_submit_build.sh +++ b/_submit_build.sh @@ -45,11 +45,11 @@ for i in $(seq 1 $LEN) do fq=`sed -n ${i}p $input_fofn` GB=`du -k $fq | awk '{printf "%.0f", $1/1024/1024}'` - if [[ $GB -lt 12 ]]; then - echo "$fq is $GB, less than 12GB. Skip splitting." + if [[ $GB -lt 15 ]]; then + echo "$fq is $GB, less than 15GB. Skip splitting." echo $fq >> $input_fofn.$i else - echo "$fq is $GB, over 12GB. Will split and run meryl in parallel." + echo "$fq is $GB, over 15GB. Will split and run meryl in parallel." echo "Split files will be in $input_fofn.$i" args="$input_fofn" split_arrs="$split_arrs$i,"