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Merqury v1.1
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@arangrhie arangrhie released this 06 Aug 02:25
· 92 commits to master since this release
v1.1
27a15fc

This is Merqury v1.1, an updated version of v1.0 with a few handy features and bug fixes.

This version is compatible and tested with Meryl v1.0.

Download the release source file and extract. No additional compiling or building needed.
Simply add MERQURY as a path variable and we are good to go.

wget https://github.com/marbl/merqury/archive/v1.1.tar.gz
tar -zxvf v1.1.tar.gz
cd merqury-1.1
export MERQURY=$PWD

Add installation dir paths for dependent tools if modules for them are not available: bedtools, samtools, igvtools, and Rscript to your environment (~/.bash_profile or ~/.profile). source it.

New features

  • Per sequence entry QV
  • Get number of falsely duplicated k-mers
  • Additional script to convert bed / hapmers to bigWig

Bug fixes

  • Use union-sum instead of union in eval/qv.sh
  • Link meryl dbs peroperly
  • Lift SLURM dependency

Thanks to everyone who reported bugs here on github or through personal communications.

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