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[pre-commit.ci] pre-commit autoupdate #78

	---
	name: CI tests

	on:
	pull_request:
	push:
	branches:
	- master

	# Cancel running workflows when additional changes are pushed
	# https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#example-using-a-fallback-value
	concurrency:
	group: ${{ github.head_ref \|\| github.run_id }}
	cancel-in-progress: true

	jobs:

	check-linkml-schemas:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3
	with:
	submodules: true

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: '3.10'
	cache: pip
	cache-dependency-path: \|
	requirements*.txt

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -U setuptools wheel
	pip install -r requirements.txt
	pip freeze

	- name: Run LinkML generators
	run: \|
	for f in $(ls schemas/*); do
	gen-pydantic -vvv --stacktrace $f
	gen-json-schema -vvv --stacktrace $f
	done

	- name: Validate examples
	run: \|
	for f in $(ls examples/extractor/*.yml); do
	linkml-validate -s schemas/extractor.yml -C Extractor $f
	done

	for f in $(ls examples/filetype/*.yml); do
	linkml-validate -s schemas/filetype.yml -C FileType $f
	done

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