deploy: 3dd2717

marda-alliance · Apr 8, 2024 · 0d03760 · 0d03760
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diff --git a/main/.doctrees/environment.pickle b/main/.doctrees/environment.pickle
diff --git a/main/.doctrees/mme_schema/FileType.doctree b/main/.doctrees/mme_schema/FileType.doctree
diff --git a/main/.doctrees/mme_schema/Installation.doctree b/main/.doctrees/mme_schema/Installation.doctree
diff --git a/main/.doctrees/mme_schema/Usage.doctree b/main/.doctrees/mme_schema/Usage.doctree
diff --git a/main/.doctrees/mme_schema/description.doctree b/main/.doctrees/mme_schema/description.doctree
diff --git a/main/.doctrees/mme_schema/id.doctree b/main/.doctrees/mme_schema/id.doctree
diff --git a/main/.doctrees/mme_schema/method.doctree b/main/.doctrees/mme_schema/method.doctree
diff --git a/main/.doctrees/mme_schema/name.doctree b/main/.doctrees/mme_schema/name.doctree
diff --git a/main/.doctrees/mme_schema/subject.doctree b/main/.doctrees/mme_schema/subject.doctree
diff --git a/main/.doctrees/mme_schema/supported_filetypes.doctree b/main/.doctrees/mme_schema/supported_filetypes.doctree
diff --git a/main/.doctrees/mme_schema/uri.doctree b/main/.doctrees/mme_schema/uri.doctree
diff --git a/main/_sources/mme_schema/FileType.md.txt b/main/_sources/mme_schema/FileType.md.txt
@@ -93,30 +93,6 @@ FileType ||--}o FileType : "base_formats"
 
 
 ## Examples
-### Example: FileType-netcdf
-
-```yaml
----
-id: >-
-    netcdf
-name: >-
-    Network Common Data Form (NetCDF) file.
-description: >-
-    A file format for storing multidimensional scientific data (variables) such as
-    temperature, humidity, pressure, wind speed, and direction. This particular record
-    represents NetCDF version 4, which used HDF5+ as a container.
-associated_vendors:
-    - UCAR
-subject:
-    - climatology
-    - meteorology - oceanography
-associated_file_extensions:
-    - nc
-associated_software:
-    - ArcGIS
-    - OriginPro
-
-```
 ### Example: FileType-example
 
 ```yaml
@@ -145,6 +121,30 @@ associated_software:
     - Bitrot Software
 
 ```
+### Example: FileType-netcdf
+
+```yaml
+---
+id: >-
+    netcdf
+name: >-
+    Network Common Data Form (NetCDF) file.
+description: >-
+    A file format for storing multidimensional scientific data (variables) such as
+    temperature, humidity, pressure, wind speed, and direction. This particular record
+    represents NetCDF version 4, which used HDF5+ as a container.
+associated_vendors:
+    - UCAR
+subject:
+    - climatology
+    - meteorology - oceanography
+associated_file_extensions:
+    - nc
+associated_software:
+    - ArcGIS
+    - OriginPro
+
+```
 
 
 

diff --git a/main/_sources/mme_schema/Installation.md.txt b/main/_sources/mme_schema/Installation.md.txt
@@ -79,14 +79,16 @@ Installation {
 
 
 ## Examples
-### Example: Installation-pip
+### Example: Installation-pip_reqs
 
 ```yaml
 ---
 method: pip
-packages:
-    - example-extractor
-requires_python: ==3.4
+requirements: >-
+    linkml >= 1.5.2, < 1.6.2
+    linkml-runtime != 1.6.1
+    pre-commit ~= 2.20
+requires_python: '>=3.8'
 
 ```
 ### Example: Installation-conda_reqs
@@ -108,16 +110,14 @@ requirements: >-
         - git+https://github.com/example/extractor.git#egg=example[all]
 
 ```
-### Example: Installation-pip_reqs
+### Example: Installation-pip
 
 ```yaml
 ---
 method: pip
-requirements: >-
-    linkml >= 1.5.2, < 1.6.2
-    linkml-runtime != 1.6.1
-    pre-commit ~= 2.20
-requires_python: '>=3.8'
+packages:
+    - example-extractor
+requires_python: ==3.4
 
 ```
 

diff --git a/main/_sources/mme_schema/Usage.md.txt b/main/_sources/mme_schema/Usage.md.txt
@@ -81,6 +81,14 @@ Usage {
 
 
 ## Examples
+### Example: Usage-cli
+
+```yaml
+---
+method: cli
+command: parse --type={{ input_type }} {{ file_path }}
+
+```
 ### Example: Usage-python_templating_scope
 
 ```yaml
@@ -119,14 +127,6 @@ setup: example
 scope: meta-only
 command: example.extractors.extract.ExampleExtractor({{ file_path }}).summarize()
 
-```
-### Example: Usage-cli
-
-```yaml
----
-method: cli
-command: parse --type={{ input_type }} {{ file_path }}
-
 ```
 ### Example: Usage-cli_filetypes
 

diff --git a/main/_sources/mme_schema/description.md.txt b/main/_sources/mme_schema/description.md.txt
@@ -18,9 +18,9 @@ URI: [schema_org:description](http://schema.org/description)
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
-[FileType](FileType.md) | A specific encoding of data for storage purposes |  no  |
 [SupportedFileType](SupportedFileType.md) | An specification of a `FileType`, supported by the parent `Extractor` |  no  |
+[FileType](FileType.md) | A specific encoding of data for storage purposes |  no  |
+[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
 
 
 

diff --git a/main/_sources/mme_schema/id.md.txt b/main/_sources/mme_schema/id.md.txt
@@ -18,9 +18,9 @@ URI: [schema_org:identifier](http://schema.org/identifier)
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
-[FileType](FileType.md) | A specific encoding of data for storage purposes |  no  |
 [SupportedFileType](SupportedFileType.md) | An specification of a `FileType`, supported by the parent `Extractor` |  no  |
+[FileType](FileType.md) | A specific encoding of data for storage purposes |  no  |
+[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
 
 
 

diff --git a/main/_sources/mme_schema/method.md.txt b/main/_sources/mme_schema/method.md.txt
@@ -13,8 +13,8 @@ URI: [mme_schema:method](https://marda-alliance.github.io/metadata_extractors_sc
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-[Usage](Usage.md) | A machine-actionable specification of a set of usage instructions of the pare... |  no  |
 [Installation](Installation.md) | A machine-actionable specification of a set of installation instructions for ... |  no  |
+[Usage](Usage.md) | A machine-actionable specification of a set of usage instructions of the pare... |  no  |
 
 
 

diff --git a/main/_sources/mme_schema/name.md.txt b/main/_sources/mme_schema/name.md.txt
@@ -18,8 +18,8 @@ URI: [schema_org:name](http://schema.org/name)
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
 [FileType](FileType.md) | A specific encoding of data for storage purposes |  no  |
+[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
 
 
 

diff --git a/main/_sources/mme_schema/subject.md.txt b/main/_sources/mme_schema/subject.md.txt
@@ -18,8 +18,8 @@ URI: [dc_terms:subject](http://purl.org/dc/terms/1.1/subject)
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
 [FileType](FileType.md) | A specific encoding of data for storage purposes |  no  |
+[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
 
 
 

diff --git a/main/_sources/mme_schema/supported_filetypes.md.txt b/main/_sources/mme_schema/supported_filetypes.md.txt
@@ -13,8 +13,8 @@ URI: [mme_schema:supported_filetypes](https://marda-alliance.github.io/metadata_
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
 [Usage](Usage.md) | A machine-actionable specification of a set of usage instructions of the pare... |  no  |
+[Extractor](Extractor.md) | A script, code, or web service that, when executed, can extract information f... |  no  |
 
 
 

diff --git a/main/_sources/mme_schema/uri.md.txt b/main/_sources/mme_schema/uri.md.txt
@@ -13,8 +13,8 @@ URI: [mme_schema:uri](https://marda-alliance.github.io/metadata_extractors_schem
 
 | Name | Description | Modifies Slot |
 | --- | --- | --- |
-[Citation](Citation.md) | A container for a citation or another form of attribution for the parent reso... |  no  |
 [License](License.md) | A container for the licensing information related to the parent resource |  no  |
+[Citation](Citation.md) | A container for a citation or another form of attribution for the parent reso... |  no  |
 
 
 

diff --git a/main/mme_schema/FileType.html b/main/mme_schema/FileType.html
@@ -66,8 +66,8 @@
 </li>
 <li class="toctree-l2"><a class="reference internal" href="#mappings">Mappings</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#examples">Examples</a><ul>
-<li class="toctree-l3"><a class="reference internal" href="#example-filetype-netcdf">Example: FileType-netcdf</a></li>
 <li class="toctree-l3"><a class="reference internal" href="#example-filetype-example">Example: FileType-example</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#example-filetype-netcdf">Example: FileType-netcdf</a></li>
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="#linkml-source">LinkML Source</a><ul>
@@ -95,8 +95,8 @@
 </li>
 <li class="toctree-l4"><a class="reference internal" href="#mappings">Mappings</a></li>
 <li class="toctree-l4"><a class="reference internal" href="#examples">Examples</a><ul>
-<li class="toctree-l5"><a class="reference internal" href="#example-filetype-netcdf">Example: FileType-netcdf</a></li>
 <li class="toctree-l5"><a class="reference internal" href="#example-filetype-example">Example: FileType-example</a></li>
+<li class="toctree-l5"><a class="reference internal" href="#example-filetype-netcdf">Example: FileType-netcdf</a></li>
 </ul>
 </li>
 <li class="toctree-l4"><a class="reference internal" href="#linkml-source">LinkML Source</a><ul>
@@ -286,30 +286,6 @@ <h2>Mappings<a class="headerlink" href="#mappings" title="Link to this heading">
 </section>
 <section id="examples">
 <h2>Examples<a class="headerlink" href="#examples" title="Link to this heading"></a></h2>
-<section id="example-filetype-netcdf">
-<h3>Example: FileType-netcdf<a class="headerlink" href="#example-filetype-netcdf" title="Link to this heading"></a></h3>
-<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="nn">---</span>
-<span class="nt">id</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">&gt;-</span>
-<span class="w">    </span><span class="no">netcdf</span>
-<span class="nt">name</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">&gt;-</span>
-<span class="w">    </span><span class="no">Network Common Data Form (NetCDF) file.</span>
-<span class="nt">description</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">&gt;-</span>
-<span class="w">    </span><span class="no">A file format for storing multidimensional scientific data (variables) such as</span>
-<span class="w">    </span><span class="no">temperature, humidity, pressure, wind speed, and direction. This particular record</span>
-<span class="w">    </span><span class="no">represents NetCDF version 4, which used HDF5+ as a container.</span>
-<span class="nt">associated_vendors</span><span class="p">:</span>
-<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">UCAR</span>
-<span class="nt">subject</span><span class="p">:</span>
-<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">climatology</span>
-<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">meteorology - oceanography</span>
-<span class="nt">associated_file_extensions</span><span class="p">:</span>
-<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">nc</span>
-<span class="nt">associated_software</span><span class="p">:</span>
-<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">ArcGIS</span>
-<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">OriginPro</span>
-</pre></div>
-</div>
-</section>
 <section id="example-filetype-example">
 <h3>Example: FileType-example<a class="headerlink" href="#example-filetype-example" title="Link to this heading"></a></h3>
 <div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="nn">---</span>
@@ -338,6 +314,30 @@ <h3>Example: FileType-example<a class="headerlink" href="#example-filetype-examp
 </pre></div>
 </div>
 </section>
+<section id="example-filetype-netcdf">
+<h3>Example: FileType-netcdf<a class="headerlink" href="#example-filetype-netcdf" title="Link to this heading"></a></h3>
+<div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="nn">---</span>
+<span class="nt">id</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">&gt;-</span>
+<span class="w">    </span><span class="no">netcdf</span>
+<span class="nt">name</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">&gt;-</span>
+<span class="w">    </span><span class="no">Network Common Data Form (NetCDF) file.</span>
+<span class="nt">description</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">&gt;-</span>
+<span class="w">    </span><span class="no">A file format for storing multidimensional scientific data (variables) such as</span>
+<span class="w">    </span><span class="no">temperature, humidity, pressure, wind speed, and direction. This particular record</span>
+<span class="w">    </span><span class="no">represents NetCDF version 4, which used HDF5+ as a container.</span>
+<span class="nt">associated_vendors</span><span class="p">:</span>
+<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">UCAR</span>
+<span class="nt">subject</span><span class="p">:</span>
+<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">climatology</span>
+<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">meteorology - oceanography</span>
+<span class="nt">associated_file_extensions</span><span class="p">:</span>
+<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">nc</span>
+<span class="nt">associated_software</span><span class="p">:</span>
+<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">ArcGIS</span>
+<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">OriginPro</span>
+</pre></div>
+</div>
+</section>
 </section>
 <section id="linkml-source">
 <h2>LinkML Source<a class="headerlink" href="#linkml-source" title="Link to this heading"></a></h2>

diff --git a/main/mme_schema/Installation.html b/main/mme_schema/Installation.html
@@ -77,9 +77,9 @@
 </li>
 <li class="toctree-l4"><a class="reference internal" href="#mappings">Mappings</a></li>
 <li class="toctree-l4"><a class="reference internal" href="#examples">Examples</a><ul>
-<li class="toctree-l5"><a class="reference internal" href="#example-installation-pip">Example: Installation-pip</a></li>
-<li class="toctree-l5"><a class="reference internal" href="#example-installation-conda-reqs">Example: Installation-conda_reqs</a></li>
 <li class="toctree-l5"><a class="reference internal" href="#example-installation-pip-reqs">Example: Installation-pip_reqs</a></li>
+<li class="toctree-l5"><a class="reference internal" href="#example-installation-conda-reqs">Example: Installation-conda_reqs</a></li>
+<li class="toctree-l5"><a class="reference internal" href="#example-installation-pip">Example: Installation-pip</a></li>
 </ul>
 </li>
 <li class="toctree-l4"><a class="reference internal" href="#linkml-source">LinkML Source</a><ul>
@@ -225,13 +225,15 @@ <h2>Mappings<a class="headerlink" href="#mappings" title="Link to this heading">
 </section>
 <section id="examples">
 <h2>Examples<a class="headerlink" href="#examples" title="Link to this heading"></a></h2>
-<section id="example-installation-pip">
-<h3>Example: Installation-pip<a class="headerlink" href="#example-installation-pip" title="Link to this heading"></a></h3>
+<section id="example-installation-pip-reqs">
+<h3>Example: Installation-pip_reqs<a class="headerlink" href="#example-installation-pip-reqs" title="Link to this heading"></a></h3>
 <div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="nn">---</span>
 <span class="nt">method</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">pip</span>
-<span class="nt">packages</span><span class="p">:</span>
-<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">example-extractor</span>
-<span class="nt">requires_python</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">==3.4</span>
+<span class="nt">requirements</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">&gt;-</span>
+<span class="w">    </span><span class="no">linkml &gt;= 1.5.2, &lt; 1.6.2</span>
+<span class="w">    </span><span class="no">linkml-runtime != 1.6.1</span>
+<span class="w">    </span><span class="no">pre-commit ~= 2.20</span>
+<span class="nt">requires_python</span><span class="p">:</span><span class="w"> </span><span class="s">&#39;&gt;=3.8&#39;</span>
 </pre></div>
 </div>
 </section>
@@ -254,15 +256,13 @@ <h3>Example: Installation-conda_reqs<a class="headerlink" href="#example-install
 </pre></div>
 </div>
 </section>
-<section id="example-installation-pip-reqs">
-<h3>Example: Installation-pip_reqs<a class="headerlink" href="#example-installation-pip-reqs" title="Link to this heading"></a></h3>
+<section id="example-installation-pip">
+<h3>Example: Installation-pip<a class="headerlink" href="#example-installation-pip" title="Link to this heading"></a></h3>
 <div class="highlight-yaml notranslate"><div class="highlight"><pre><span></span><span class="nn">---</span>
 <span class="nt">method</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">pip</span>
-<span class="nt">requirements</span><span class="p">:</span><span class="w"> </span><span class="p p-Indicator">&gt;-</span>
-<span class="w">    </span><span class="no">linkml &gt;= 1.5.2, &lt; 1.6.2</span>
-<span class="w">    </span><span class="no">linkml-runtime != 1.6.1</span>
-<span class="w">    </span><span class="no">pre-commit ~= 2.20</span>
-<span class="nt">requires_python</span><span class="p">:</span><span class="w"> </span><span class="s">&#39;&gt;=3.8&#39;</span>
+<span class="nt">packages</span><span class="p">:</span>
+<span class="w">    </span><span class="p p-Indicator">-</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">example-extractor</span>
+<span class="nt">requires_python</span><span class="p">:</span><span class="w"> </span><span class="l l-Scalar l-Scalar-Plain">==3.4</span>
 </pre></div>
 </div>
 </section>