hospital-origin

Heuristic and Bayesian methods of predicting hospital origin of UK MRSA isolates

This repository contains the R scripts containing the methods in paper https://www.biorxiv.org/content/10.1101/442319v1 used to produce its results, for both the heuristic & Bayesian statistical approaches.

Content

Main script: Heuristic and Bayes Script.R

Aesthetics files required:

-- Folder: hospital colour code images

-- Script: plotting_aesthetics_2001to2010hosps.R

Notes

In scripts, MA = Marianne Aspbury; JS = James Sciberras