diff --git a/ci_run_examples.sh b/ci_run_examples.sh index 3c00bef61..15cdc0fbc 100644 --- a/ci_run_examples.sh +++ b/ci_run_examples.sh @@ -3,13 +3,15 @@ set -e # exit upon first error # >> append content # > erase original content -echo "#!/bin/bash -x -v" > sh_temp_example.sh +# echo "#!/bin/bash -x -v" > sh_temp_example.sh sed -n '/```shell/,/```/ p' docs/doc_examples.md | sed '/^```/ d' >> ./sh_temp_example.sh -bash -x -v -e sh_temp_example.sh +split -l 5 sh_temp_example.sh sh_example_split +for file in sh_example_split*; +do (echo "#!/bin/bash -x -v" > "$file"_exe && cat "$file" >> "$file"_exe && bash -x -v "$file"_exe && rm -r zoutput); +done +# bash -x -v -e sh_temp_example.sh echo "general examples done" -rm -r zoutput - echo "#!/bin/bash -x -v" > sh_temp_mnist.sh sed -n '/```shell/,/```/ p' docs/doc_MNIST_classification.md | sed '/^```/ d' >> ./sh_temp_mnist.sh bash -x -v -e sh_temp_mnist.sh diff --git a/poetry.lock b/poetry.lock index 86a04168e..c000ea402 100644 --- a/poetry.lock +++ b/poetry.lock @@ -54,7 +54,7 @@ python-versions = ">=3.6" [[package]] name = "charset-normalizer" -version = "3.2.0" +version = "3.3.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "main" optional = false @@ -106,13 +106,35 @@ mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.2.0)", "types-Pill test = ["Pillow", "contourpy[test-no-images]", "matplotlib"] test-no-images = ["pytest", "pytest-cov", "wurlitzer"] +[[package]] +name = "contourpy" +version = "1.1.1" +description = "Python library for calculating contours of 2D quadrilateral grids" +category = "main" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +numpy = {version = ">=1.16,<2.0", markers = "python_version <= \"3.11\""} + +[package.extras] +bokeh = ["bokeh", "selenium"] +docs = ["furo", "sphinx (>=7.2)", "sphinx-copybutton"] +mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.4.1)", "types-Pillow"] +test = ["Pillow", "contourpy[test-no-images]", "matplotlib"] +test-no-images = ["pytest", "pytest-cov", "wurlitzer"] + [[package]] name = "cycler" -version = "0.11.0" +version = "0.12.1" description = "Composable style cycles" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.8" + +[package.extras] +docs = ["ipython", "matplotlib", "numpydoc", "sphinx"] +tests = ["pytest", "pytest-cov", "pytest-xdist"] [[package]] name = "datrie" @@ -140,7 +162,7 @@ python-versions = ">=3.7" [[package]] name = "fastjsonschema" -version = "2.18.0" +version = "2.18.1" description = "Fastest Python implementation of JSON schema" category = "main" optional = false @@ -151,19 +173,20 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc [[package]] name = "filelock" -version = "3.12.2" +version = "3.12.4" description = "A platform independent file lock." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] -docs = ["furo (>=2023.5.20)", "sphinx (>=7.0.1)", "sphinx-autodoc-typehints (>=1.23,!=1.23.4)"] -testing = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "diff-cover (>=7.5)", "pytest (>=7.3.1)", "pytest-cov (>=4.1)", "pytest-mock (>=3.10)", "pytest-timeout (>=2.1)"] +docs = ["furo (>=2023.7.26)", "sphinx (>=7.1.2)", "sphinx-autodoc-typehints (>=1.24)"] +testing = ["covdefaults (>=2.3)", "coverage (>=7.3)", "diff-cover (>=7.7)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "pytest-timeout (>=2.1)"] +typing = ["typing-extensions (>=4.7.1)"] [[package]] name = "fonttools" -version = "4.42.0" +version = "4.43.1" description = "Tools to manipulate font files" category = "main" optional = false @@ -211,7 +234,7 @@ smmap = ">=3.0.1,<6" [[package]] name = "GitPython" -version = "3.1.32" +version = "3.1.37" description = "GitPython is a Python library used to interact with Git repositories" category = "main" optional = false @@ -220,6 +243,9 @@ python-versions = ">=3.7" [package.dependencies] gitdb = ">=4.0.1,<5" +[package.extras] +test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-sugar"] + [[package]] name = "humanfriendly" version = "10.0" @@ -241,7 +267,7 @@ python-versions = ">=3.5" [[package]] name = "importlib-resources" -version = "6.0.1" +version = "6.1.0" description = "Read resources from Python packages" category = "main" optional = false @@ -251,8 +277,8 @@ python-versions = ">=3.8" zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff", "zipp (>=3.17)"] [[package]] name = "iniconfig" @@ -286,7 +312,7 @@ python-versions = ">=3.7" [[package]] name = "jsonschema" -version = "4.19.0" +version = "4.19.1" description = "An implementation of JSON Schema validation for Python" category = "main" optional = false @@ -315,7 +341,7 @@ referencing = ">=0.28.0" [[package]] name = "jupyter-core" -version = "5.3.1" +version = "5.3.2" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "main" optional = false @@ -332,7 +358,7 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] [[package]] name = "kiwisolver" -version = "1.4.4" +version = "1.4.5" description = "A fast implementation of the Cassowary constraint solver" category = "main" optional = false @@ -369,11 +395,11 @@ python-versions = ">=3.7" [[package]] name = "matplotlib" -version = "3.7.2" +version = "3.8.0" description = "Python plotting package" category = "main" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" [package.dependencies] contourpy = ">=1.0.1" @@ -381,10 +407,10 @@ cycler = ">=0.10" fonttools = ">=4.22.0" importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""} kiwisolver = ">=1.0.1" -numpy = ">=1.20" +numpy = ">=1.21,<2" packaging = ">=20.0" pillow = ">=6.2.0" -pyparsing = ">=2.3.1,<3.1" +pyparsing = ">=2.3.1" python-dateutil = ">=2.7" setuptools_scm = ">=7" @@ -424,7 +450,7 @@ python-versions = ">=3.9" [[package]] name = "packaging" -version = "23.1" +version = "23.2" description = "Core utilities for Python packages" category = "main" optional = false @@ -464,7 +490,7 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa [[package]] name = "plac" -version = "1.3.5" +version = "1.4.0" description = "The smartest command line arguments parser in the world" category = "main" optional = false @@ -472,7 +498,7 @@ python-versions = "*" [[package]] name = "platformdirs" -version = "3.10.0" +version = "3.11.0" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." category = "main" optional = false @@ -484,11 +510,11 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4)", "pytest-co [[package]] name = "pluggy" -version = "1.2.0" +version = "1.3.0" description = "plugin and hook calling mechanisms for python" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] dev = ["pre-commit", "tox"] @@ -534,7 +560,7 @@ plugins = ["importlib-metadata"] [[package]] name = "pyparsing" -version = "3.0.9" +version = "3.1.1" description = "pyparsing module - Classes and methods to define and execute parsing grammars" category = "main" optional = false @@ -593,7 +619,7 @@ six = ">=1.5" [[package]] name = "pytz" -version = "2023.3" +version = "2023.3.post1" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -656,7 +682,7 @@ python-versions = ">=3.7" [[package]] name = "rich" -version = "13.5.2" +version = "13.6.0" description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal" category = "main" optional = false @@ -671,7 +697,7 @@ jupyter = ["ipywidgets (>=7.5.1,<9)"] [[package]] name = "rpds-py" -version = "0.9.2" +version = "0.10.4" description = "Python bindings to Rust's persistent data structures (rpds)" category = "main" optional = false @@ -679,7 +705,7 @@ python-versions = ">=3.8" [[package]] name = "scikit-learn" -version = "1.3.0" +version = "1.3.1" description = "A set of python modules for machine learning and data mining" category = "main" optional = false @@ -687,7 +713,7 @@ python-versions = ">=3.8" [package.dependencies] joblib = ">=1.1.1" -numpy = ">=1.17.3" +numpy = ">=1.17.3,<2.0" scipy = ">=1.5.0" threadpoolctl = ">=2.0.0" @@ -733,34 +759,35 @@ stats = ["scipy (>=1.3)", "statsmodels (>=0.10)"] [[package]] name = "setuptools" -version = "68.0.0" +version = "68.2.2" description = "Easily download, build, install, upgrade, and uninstall Python packages" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] -docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] -testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] -testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.1)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] [[package]] name = "setuptools-scm" -version = "7.1.0" +version = "8.0.4" description = "the blessed package to manage your versions by scm tags" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] -packaging = ">=20.0" +packaging = ">=20" setuptools = "*" -tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""} +tomli = {version = ">=1", markers = "python_version < \"3.11\""} typing-extensions = "*" [package.extras] -test = ["pytest (>=6.2)", "virtualenv (>20)"] -toml = ["setuptools (>=42)"] +docs = ["entangled-cli[rich]", "mkdocs", "mkdocs-entangled-plugin", "mkdocs-material", "mkdocstrings[python]", "pygments"] +rich = ["rich"] +test = ["build", "pytest", "rich", "wheel"] [[package]] name = "six" @@ -772,7 +799,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "smart-open" -version = "6.3.0" +version = "6.4.0" description = "Utils for streaming large files (S3, HDFS, GCS, Azure Blob Storage, gzip, bz2...)" category = "main" optional = false @@ -790,15 +817,15 @@ webhdfs = ["requests"] [[package]] name = "smmap" -version = "5.0.0" +version = "5.0.1" description = "A pure Python implementation of a sliding window memory map manager" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "snakemake" -version = "7.21.0" +version = "7.32.4" description = "Workflow management system to create reproducible and scalable data analyses" category = "main" optional = false @@ -807,7 +834,7 @@ python-versions = ">=3.7" [package.dependencies] appdirs = "*" configargparse = "*" -connection-pool = ">=0.0.3" +connection_pool = ">=0.0.3" datrie = "*" docutils = "*" gitpython = "*" @@ -815,20 +842,22 @@ humanfriendly = "*" jinja2 = ">=3.0,<4.0" jsonschema = "*" nbformat = "*" +packaging = "*" psutil = "*" pulp = ">=2.0" pyyaml = "*" requests = "*" reretry = "*" -smart-open = ">=3.0" +smart_open = ">=3.0" stopit = "*" tabulate = "*" throttler = "*" -toposort = "*" +toposort = ">=1.10" wrapt = "*" -yte = ">=1.0,<2.0" +yte = ">=1.5.1,<2.0" [package.extras] +azure = ["azure-batch", "azure-core", "azure-identity", "azure-mgmt-batch", "azure-storage-blob"] google-cloud = ["google-api-python-client", "google-cloud-storage", "google-crc32c", "oauth2client"] messaging = ["slacker"] pep = ["eido", "peppy"] @@ -836,11 +865,11 @@ reports = ["pygments"] [[package]] name = "soupsieve" -version = "2.4.1" +version = "2.5" description = "A modern CSS selector implementation for Beautiful Soup." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [[package]] name = "stopit" @@ -975,27 +1004,27 @@ telegram = ["requests"] [[package]] name = "traitlets" -version = "5.9.0" +version = "5.11.2" description = "Traitlets Python configuration system" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"] -test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"] +test = ["argcomplete (>=3.0.3)", "mypy (>=1.5.1)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"] [[package]] name = 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a/requirements.txt b/requirements.txt index df7bf73a0..f69d99e00 100644 --- a/requirements.txt +++ b/requirements.txt @@ -2,67 +2,67 @@ appdirs==1.4.4 ; python_version >= "3.9" and python_version < "4.0" attrs==23.1.0 ; python_version >= "3.9" and python_version < "4.0" beautifulsoup4==4.12.2 ; python_version >= "3.9" and python_version < "4.0" certifi==2023.7.22 ; python_version >= "3.9" and python_version < "4.0" -charset-normalizer==3.2.0 ; python_version >= "3.9" and python_version < "4.0" +charset-normalizer==3.3.0 ; python_version >= "3.9" and python_version < "4.0" colorama==0.4.6 ; python_version >= "3.9" and python_version < "4.0" and platform_system == "Windows" configargparse==1.7 ; python_version >= "3.9" and python_version < "4.0" connection-pool==0.0.3 ; python_version >= "3.9" and python_version < "4.0" -contourpy==1.1.0 ; python_version >= "3.9" and python_version < "4.0" -cycler==0.11.0 ; python_version >= "3.9" and python_version < "4.0" +contourpy==1.1.1 ; 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python_version >= "3.9" and python_version < "4.0" humanfriendly==10.0 ; python_version >= "3.9" and python_version < "4.0" idna==3.4 ; python_version >= "3.9" and python_version < "4.0" -importlib-resources==6.0.1 ; python_version >= "3.9" and python_version < "3.10" +importlib-resources==6.1.0 ; python_version >= "3.9" and python_version < "3.10" jinja2==3.1.2 ; python_version >= "3.9" and python_version < "4.0" joblib==1.3.2 ; python_version >= "3.9" and python_version < "4.0" jsonschema-specifications==2023.7.1 ; python_version >= "3.9" and python_version < "4.0" -jsonschema==4.19.0 ; python_version >= "3.9" and python_version < "4.0" -jupyter-core==5.3.1 ; python_version >= "3.9" and python_version < "4.0" -kiwisolver==1.4.4 ; python_version >= "3.9" and python_version < "4.0" +jsonschema==4.19.1 ; python_version >= "3.9" and python_version < "4.0" +jupyter-core==5.3.2 ; python_version >= "3.9" and python_version < "4.0" +kiwisolver==1.4.5 ; python_version >= "3.9" and python_version < "4.0" markdown-it-py==3.0.0 ; python_version >= "3.9" and python_version < "4.0" markupsafe==2.1.3 ; python_version >= "3.9" and python_version < "4.0" -matplotlib==3.7.2 ; python_version >= "3.9" and python_version < "4.0" +matplotlib==3.8.0 ; python_version >= "3.9" and python_version < "4.0" mdurl==0.1.2 ; python_version >= "3.9" and python_version < "4.0" nbformat==5.9.2 ; python_version >= "3.9" and python_version < "4.0" -numpy==1.25.2 ; python_version < "4.0" and python_version >= "3.9" -packaging==23.1 ; python_version >= "3.9" and python_version < "4.0" +numpy==1.25.2 ; python_version >= "3.9" and python_version < "4.0" +packaging==23.2 ; python_version >= "3.9" and python_version < "4.0" pandas==1.5.3 ; python_version >= "3.9" and python_version < "4.0" pillow==9.5.0 ; python_version >= "3.9" and python_version < "4.0" -plac==1.3.5 ; python_version >= "3.9" and python_version < "4.0" -platformdirs==3.10.0 ; python_version >= "3.9" and python_version < "4.0" +plac==1.4.0 ; python_version >= "3.9" and python_version < "4.0" +platformdirs==3.11.0 ; python_version >= "3.9" and python_version < "4.0" psutil==5.9.5 ; python_version >= "3.9" and python_version < "4.0" pulp==2.7.0 ; python_version >= "3.9" and python_version < "4.0" pygments==2.16.1 ; python_version >= "3.9" and python_version < "4.0" -pyparsing==3.0.9 ; python_version >= "3.9" and python_version < "4.0" +pyparsing==3.1.1 ; python_version >= "3.9" and python_version < "4.0" pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.9" and python_version < "4.0" pysocks==1.7.1 ; python_version >= "3.9" and python_version < "4.0" python-dateutil==2.8.2 ; python_version >= "3.9" and python_version < "4.0" -pytz==2023.3 ; python_version >= "3.9" and python_version < "4.0" +pytz==2023.3.post1 ; python_version >= "3.9" and python_version < "4.0" pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.9" and python_version < "4.0" pyyaml==6.0.1 ; python_version >= "3.9" and python_version < "4.0" referencing==0.30.2 ; python_version >= "3.9" and python_version < "4.0" requests==2.31.0 ; python_version >= "3.9" and python_version < "4.0" requests[socks]==2.31.0 ; python_version >= "3.9" and python_version < "4.0" reretry==0.11.8 ; python_version >= "3.9" and python_version < "4.0" -rich==13.5.2 ; python_version >= "3.9" and python_version < "4.0" -rpds-py==0.9.2 ; python_version >= "3.9" and python_version < "4.0" -scikit-learn==1.3.0 ; python_version >= "3.9" and python_version < "4.0" +rich==13.6.0 ; python_version >= "3.9" and python_version < "4.0" +rpds-py==0.10.4 ; python_version >= "3.9" and python_version < "4.0" +scikit-learn==1.3.1 ; python_version >= "3.9" and python_version < "4.0" scipy==1.9.3 ; python_version >= "3.9" and python_version < "4.0" seaborn==0.12.2 ; python_version >= "3.9" and python_version < "4.0" -setuptools-scm==7.1.0 ; python_version >= "3.9" and python_version < "4.0" -setuptools==68.0.0 ; python_version >= "3.9" and python_version < "4.0" +setuptools-scm==8.0.4 ; python_version >= "3.9" and python_version < "4.0" +setuptools==68.2.2 ; python_version >= "3.9" and python_version < "4.0" six==1.16.0 ; python_version >= "3.9" and python_version < "4.0" -smart-open==6.3.0 ; python_version >= "3.9" and python_version < "4.0" -smmap==5.0.0 ; python_version >= "3.9" and python_version < "4.0" +smart-open==6.4.0 ; python_version >= "3.9" and python_version < "4.0" +smmap==5.0.1 ; python_version >= "3.9" and python_version < "4.0" snakemake==7.32.4 ; python_version >= "3.9" and python_version < "4.0" -soupsieve==2.4.1 ; python_version >= "3.9" and python_version < "4.0" +soupsieve==2.5 ; python_version >= "3.9" and python_version < "4.0" stopit==1.1.2 ; python_version >= "3.9" and python_version < "4.0" tabulate==0.9.0 ; python_version >= "3.9" and python_version < "4.0" threadpoolctl==3.2.0 ; python_version >= "3.9" and python_version < "4.0" @@ -74,9 +74,9 @@ torch==1.12.1 ; python_version >= "3.9" and python_version < "4.0" torchmetrics==0.10.3 ; python_version >= "3.9" and python_version < "4.0" torchvision==0.13.1 ; python_version >= "3.9" and python_version < "4.0" tensorboard==2.14.0 ; python_version >= "3.9" and python_version < "4.0" -traitlets==5.9.0 ; python_version >= "3.9" and python_version < "4.0" -typing-extensions==4.7.1 ; python_version >= "3.9" and python_version < "4.0" -urllib3==2.0.4 ; python_version >= "3.9" and python_version < "4.0" +traitlets==5.11.2 ; python_version >= "3.9" and python_version < "4.0" +typing-extensions==4.8.0 ; python_version >= "3.9" and python_version < "4.0" +urllib3==2.0.6 ; python_version >= "3.9" and python_version < "4.0" wrapt==1.15.0 ; python_version >= "3.9" and python_version < "4.0" yte==1.5.1 ; python_version >= "3.9" and python_version < "4.0" -zipp==3.16.2 ; python_version >= "3.9" and python_version < "3.10" +zipp==3.17.0 ; python_version >= "3.9" and python_version < "3.10" diff --git a/sh_gen_requirements.sh b/sh_gen_requirements.sh index a1feef26d..5c0d3248a 100644 --- a/sh_gen_requirements.sh +++ b/sh_gen_requirements.sh @@ -1,2 +1,3 @@ #!/bin/bash +poetry update poetry export -f requirements.txt --output requirements.txt --without-hashes --without-urls diff --git a/tests/test_custom_model.py b/tests/test_custom_model.py index 2bb03c184..75a6957b7 100644 --- a/tests/test_custom_model.py +++ b/tests/test_custom_model.py @@ -69,13 +69,14 @@ class Custom(AModelCustom): def dict_net_module_na2arg_na(self): pass + img = torch.rand(1, 3, 28, 28) mod = Custom(None) with pytest.raises(NotImplementedError): mod.cal_logit_y(None) with pytest.raises(NotImplementedError): - mod.forward(None, None, None) + mod.forward(img, None, None) with pytest.raises(NotImplementedError): - mod.cal_loss(None, None, None) + mod.cal_loss(img, None, None) del mod torch.cuda.empty_cache() gc.collect()