Bugfixes

What's Changed

• feat: Emit version number and commit hash
• fix: groups not working when using subsets
• fix: panacus-visualize rejecting ordered-histgrowth
• fix: coverage estimation on subsets in intervals
• fix: growth always showing hist
• fix: growth-html not showing the info section
• fix: growth not accepting hist histogram

Full Changelog: 0.2.4...0.2.5

New info command!

What's Changed

• feat: added info command to show basic stats of GFA file @heringerp @lucaparmigiani
• feat: added info section to html output to show basic stats of graph @heringerp
• fix: add MultiGzDecoder to allow working with .gz files with multiple blocks @sharkLoc
• fix: fixed array out of bounds error caused by empty group @danydoerr
• fix: ordered-histgrowth plots now show path names instead of indices @heringerp
• fix: improved counting for nodes with overlap multiple include/exclude intervals @danydoerr
• fix: solved overflow issue in hists @heringerp
• doc: added examples @heringerp
• doc: cleaned up README @heringerp
• doc: improved help texts @heringerp

Full Changelog: 0.2.3...0.2.4

Improved visualization script

Thanks to @subwaystation and @heringerp for their contributions to make panacus-visualize more generic, allowing to change the output format of the plot as well as providing an option to separate plots into multiple files.

Feature alarm!

⚠️ This release is not backwards compatible with earlier versions ⚠️

This release introduces a view new features to panacus

• can deal with (erroneously) duplicated edges, counts are no longer affected by it
• accepts now gzip compressed GFA files (must end with .gz)
• most commands now support to output stats for all features (bp, node, edge) at once
• most commands support HTML output which produces a nice, self-contained, interactive report page

Bugfixes:

• Fixes issues on malformatted path names (issue #6)

Bugfixes, bugfixes, bugfixes

This release

• fixes lots of bugs concerning subsetting/exclusion, ordered-histgrowth and table, and in the visualization script
• has a new implementation for data structures used in ordered-histgrowth and table that are much more memory efficient and faster

0.2

All new version, lots of new functionality and it's blazing fast, too!