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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(HXB2_C2V3C3_AlignmentPositionConverter)
export(aaseqToAAIndex)
export(aaseqToAAIndex.batch)
export(aaseqToBoolian)
export(aaseqToBoolian.batch)
export(bayesianPosteriorProbability)
export(bayesianPosteriorProbabilityPlot)
export(combinedDatasetSummaryTable)
export(dataImportAndCombine)
export(ggPhyloTree)
export(ggPhyloTree.Mirror)
export(ggPie)
export(ggRF)
export(gvSankey)
export(machineLearning.Comparison)
export(machineLearning.Comparison.Bootstrap)
export(machineLearning.Comparison.default)
export(machineLearning.DataFormat)
export(machineLearning.FeatureImportanceAnalysis)
export(machineLearning.Matrix)
export(machineLearning.ResidueAAIndexDualPlot)
export(machineLearning.Stacking.Predict)
export(machineLearning.Stacking.Predict_From_Metadataset)
export(machineLearning.Stacking.Predict_From_PreprocessedDataset)
export(machineLearning.StepwiseFeatureReduction)
import(ggplot2)
import(grid)
importFrom(DescTools,Sort)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rmisc,CI)
importFrom(ape,drop.tip)
importFrom(ape,read.tree)
importFrom(caret,confusionMatrix)
importFrom(caret,createDataPartition)
importFrom(caret,dummyVars)
importFrom(caret,preProcess)
importFrom(caret,train)
importFrom(caret,varImp)
importFrom(data.table,transpose)
importFrom(dplyr,"%>%")
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,contains)
importFrom(dplyr,filter)
importFrom(dplyr,funs)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_)
importFrom(dplyr,matches)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_)
importFrom(dplyr,one_of)
importFrom(dplyr,select)
importFrom(dplyr,select_)
importFrom(dplyr,select_at)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_at)
importFrom(dplyr,ungroup)
importFrom(dplyr,vars)
importFrom(ggplot2,scale_x_reverse)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_label)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(ggsci,scale_color_npg)
importFrom(ggtree,geom_tiplab)
importFrom(ggtree,ggtree)
importFrom(ggtree,groupOTU)
importFrom(ggtree,theme_tree2)
importFrom(googleVis,gvisSankey)
importFrom(grid,unit)
importFrom(gridExtra,grid.arrange)
importFrom(igraph,V)
importFrom(igraph,delete_vertices)
importFrom(igraph,graph_from_data_frame)
importFrom(magrittr,set_colnames)
importFrom(optimbase,transpose)
importFrom(purrr,is_empty)
importFrom(randomForest,getTree)
importFrom(scales,rescale)
importFrom(seqinr,read.alignment)
importFrom(stringdist,stringdistmatrix)
importFrom(stringr,fixed)
importFrom(stringr,str_count)
importFrom(stringr,str_detect)
importFrom(stringr,str_length)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(tableone,CreateTableOne)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)