forked from Ensembl/ensj-healthcheck
-
Notifications
You must be signed in to change notification settings - Fork 0
/
database.defaults.properties
134 lines (107 loc) · 3.88 KB
/
database.defaults.properties
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
# -----------------------------------------------------------------------------
#
# Configure which tests should be run
#
# Add groups of tests here
groups =
# Exclude groups of tests here
less =
# Add individual tests here
include_tests =
# Exclude individual tests here
notest =
# -----------------------------------------------------------------------------
# Database that should be tested (e.g.: ensembl_compara_bacteria_5_58). Any
# configured tests will be run on this database.
#
test_databases =
#
# Configure the database details necessary to connect to the databases
# specified in "output.databases"
#
host = mysql-gti-dev-1
port = 4484
user = ensro
password =
driver = org.gjt.mm.mysql.Driver
host1 = mysql-ens-sta-1
port1 = 4519
user1 = ensro
driver1 = org.gjt.mm.mysql.Driver
host2 = mysql-ens-sta-1
port2 = 4519
user2 = ensro
driver2 = org.gjt.mm.mysql.Driver
#
# Some tests require a second database. Configure the details of the database
# server on which this should be found here.
#
# Note that most tests that require a secondary database will not work for
# Ensembl Genomes.
#
secondary.host = mysql-ensembl-mirror
secondary.port = 4240
secondary.user = ensro
secondary.password =
secondary.driver = org.gjt.mm.mysql.Driver
secondary.database =
# -----------------------------------------------------------------------------
#
# Alternatively reporterType can be set to "Text".
reportertype = Text
# Set the level of verbosity for the output
outputlevel = Problem
# We need meaningful errormessages for misspelled options!
# Other option is Discoverybased
testregistrytype = ConfigurationBased
# -----------------------------------------------------------------------------
# The output.* properties are used when database results are written to a
# database.
output.driver = org.gjt.mm.mysql.Driver
# Connection details for the database server on which the database for the
# results of the healthchecks will be written to. This will not work with
# the defaults here, the user has to override these settings or at least
# provide a password.
#
output.host = mysql-ens-general-prod-1
output.port = 3306
output.user = ensro
output.password =
# The name of the database where the results of the healthchecks are written
# to
#
output.database = healthchecks_default
# If output.database does not exist, it will be created automatically. This
# file should have the SQL commands to create the schema. Please remember
# that hashes (#) are not allowed to start comments in SQL. Use two dashes
# "--" at the beginning of a line instead.
#
# If the configurable testrunner can't find this file from the current
# working directory, it will search for it on the classpath.
#
output.schemafile = table.sql
# Gets written into the database
release = 90
# -----------------------------------------------------------------------------
schema.file=perlcode/ensembl/sql/table.sql
funcgen_schema.file=perlcode/ensembl-funcgen/sql/table.sql
variation_schema.file=perlcode/ensembl-variation/sql/table.sql
# Master schema - used for the
#
# - org.ensembl.healthcheck.testcase.generic.CompareSchema
# - org.ensembl.healthcheck.testcase.variation.CompareVariationSchema and the
# - org.ensembl.healthcheck.testcase.funcgen.CompareFuncgenSchema
#
# healthchecks. The healthchecks use the database type to filter out the
# databases to which this comparison is applicable. The database type is
# ultimately determined by the regular expressions in
# org.ensembl.healthcheck.DatabaseRegistryEntry. Then they are compared
# to one of these databases, depending on which healthcheck is run:
#
master.schema = master_schema_90
master.variation_schema = master_schema_variation_90
master.funcgen_schema = master_schema_funcgen_90
#
# The master.* settings are ignored if none of the Compare*Schema are run.
#
repair =