torchdms

THIS PACKAGE IS CURRENTLY UNDER ACTIVE DEVELOPMENT.

We expect a more stable version with documentation soon. Stay tuned!

👉 Command-line and API documentation 👈

What is this?

PyTorch for Deep Mutational Scanning (torchdms) is a Python package made to train neural networks on amino-acid substitution data, predicting some chosen functional score(s). We use the binary encoding of variants from the binarymap package as input to feed-forward networks.

Developer install (suggested)

git clone git@github.com:matsengrp/torchdms.git
cd torchdms
make install
make test