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ro.obo
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ro.obo
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format-version: 1.2
data-version: releases/2017-07-19
subsetdef: ro-eco ""
subsetdef: RO:0002259 ""
remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 32 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/annotations.owl>) VersionIRI(<null>))) [Axioms: 61 Logical Axioms: 0]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/bfo-axioms.owl>) VersionIRI(<null>))) [Axioms: 18 Logical Axioms: 7]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/bfo-classes-minimal.owl>) VersionIRI(<null>))) [Axioms: 53 Logical Axioms: 12]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/core.owl>) VersionIRI(<null>))) [Axioms: 278 Logical Axioms: 58]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/el-constraints.owl>) VersionIRI(<null>))) [Axioms: 6 Logical Axioms: 2]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go-biotic.owl>) VersionIRI(<null>))) [Axioms: 42 Logical Axioms: 16]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go_cc_import.owl>) VersionIRI(<null>))) [Axioms: 49 Logical Axioms: 14]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go_mf_import.owl>) VersionIRI(<null>))) [Axioms: 29 Logical Axioms: 9]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/pato_import.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 6]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/rohom.owl>) VersionIRI(<null>))) [Axioms: 731 Logical Axioms: 148]
remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/temporal-intervals.owl>) VersionIRI(<null>))) [Axioms: 146 Logical Axioms: 45]
ontology: ro
property_value: http://purl.org/dc/elements/1.1/description "The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies." xsd:string
property_value: http://purl.org/dc/elements/1.1/source http://obofoundry.org/ro
property_value: http://purl.org/dc/elements/1.1/title "OBO Relations Ontology" xsd:string
property_value: http://xmlns.com/foaf/0.1/homepage " https://github.com/oborel/obo-relations/" xsd:anyURI
owl-axioms: Prefix(owl:=<http://www.w3.org/2002/07/owl#>)\nPrefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)\nPrefix(xml:=<http://www.w3.org/XML/1998/namespace>)\nPrefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)\nPrefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)\n\n\nOntology(\nDeclaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/BFO_0000004>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/BFO_0000015>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/BFO_0000040>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/BFO_0000141>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/CARO_0010000>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/CL_0000000>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/CL_0000540>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0003674>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0004842>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0008150>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0016301>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0044403>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0072519>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0085030>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/GO_0085031>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/PATO_0000402>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/PATO_0001199>))\nDeclaration(Class(<http://purl.obolibrary.org/obo/RO_0002577>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000050>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000051>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000055>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000062>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000063>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000066>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000052>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000053>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000056>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0000057>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0001025>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002008>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002103>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002132>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002170>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002176>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002207>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002211>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002212>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002213>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002215>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002233>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002234>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002326>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002327>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002331>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002333>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002351>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002376>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002378>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002379>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002380>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002400>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002406>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002408>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002411>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002418>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002425>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002440>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002441>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002442>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002443>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002444>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002447>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002448>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002449>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002450>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002461>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002462>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002463>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002465>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002466>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002467>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002468>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002480>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002481>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002482>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002496>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002497>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002566>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002578>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002583>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002593>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0003000>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0009001>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0009002>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0009003>))\nDeclaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0009005>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000426>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0001900>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002161>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002171>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002172>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002173>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002174>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002175>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002416>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002419>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002420>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002421>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002422>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002423>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002474>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002475>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002483>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002484>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002504>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002535>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002536>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002537>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002538>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002539>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002540>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002541>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002542>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002543>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002544>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002545>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002546>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002547>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002548>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002549>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002550>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002560>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002561>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002562>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002575>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002579>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002580>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002581>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002582>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002594>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002601>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002602>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002603>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002604>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002605>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002611>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002612>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002613>))\nDeclaration(AnnotationProperty(<http://purl.obolibrary.org/obo/RO_0002617>))\nDeclaration(AnnotationProperty(<http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled>))\n############################\n# Annotation Properties\n############################\n\n# Annotation Property: <http://purl.obolibrary.org/obo/IAO_0000426> (first order logic expression)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/IAO_0000426> <http://purl.obolibrary.org/obo/RO_0002422>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0001900> (temporal interpretation)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0001900> <http://purl.obolibrary.org/obo/RO_0002422>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002161> (never in taxon)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002161> <http://purl.obolibrary.org/obo/RO_0002172>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002171> (mutually spatially disjoint with)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002171> <http://purl.obolibrary.org/obo/RO_0002420>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002172> (taxonomic class assertion)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002172> <http://purl.obolibrary.org/obo/RO_0002420>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002173> (ambiguous for taxon)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002173> <http://purl.obolibrary.org/obo/RO_0002172>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002174> (dubious for taxon)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002174> <http://purl.obolibrary.org/obo/RO_0002172>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002175> (present in taxon)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002175> <http://purl.obolibrary.org/obo/RO_0002172>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002419> (annotation property cardinality)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002419> <http://purl.obolibrary.org/obo/RO_0002423>)\nAnnotationPropertyRange(<http://purl.obolibrary.org/obo/RO_0002419> xsd:nonNegativeInteger)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002420> (logical macro assertion on a class)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002420> <http://purl.obolibrary.org/obo/RO_0002416>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002421> (logical macro assertion on a property)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002421> <http://purl.obolibrary.org/obo/RO_0002416>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002422> (logical macro assertion on an object property)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002422> <http://purl.obolibrary.org/obo/RO_0002421>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002423> (logical macro assertion on an annotation property)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002423> <http://purl.obolibrary.org/obo/RO_0002421>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002474> (dispositional interpretation)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002474> <http://purl.obolibrary.org/obo/RO_0002422>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002475> (has no connections with)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002475> <http://purl.obolibrary.org/obo/RO_0002420>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002484> (curator guidance link)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002484> <http://purl.obolibrary.org/obo/RO_0002483>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002504> (always present in taxon)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002504> <http://purl.obolibrary.org/obo/RO_0002175>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002535> (temporal logical macro assertion on a class)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002535> <http://purl.obolibrary.org/obo/RO_0002420>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002536> (measurement property has unit)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002536> <http://purl.obolibrary.org/obo/RO_0002423>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002537> (has start time value)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002537> <http://purl.obolibrary.org/obo/RO_0002535>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002538> (has end time value)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002538> <http://purl.obolibrary.org/obo/RO_0002535>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002539> (start, days post fertilization)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002539> <http://purl.obolibrary.org/obo/RO_0002537>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002540> (end, days post fertilization)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002540> <http://purl.obolibrary.org/obo/RO_0002538>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002541> (start, years post birth)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002541> <http://purl.obolibrary.org/obo/RO_0002537>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002542> (end, years post birth)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002542> <http://purl.obolibrary.org/obo/RO_0002538>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002543> (start, months post birth)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002543> <http://purl.obolibrary.org/obo/RO_0002537>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002544> (end, months post birth)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002544> <http://purl.obolibrary.org/obo/RO_0002538>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002545> (month of gestation)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002545> <http://purl.obolibrary.org/obo/RO_0002535>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002546> (has developmental stage marker)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002546> <http://purl.obolibrary.org/obo/RO_0002535>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002547> (start, days post coitum)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002547> <http://purl.obolibrary.org/obo/RO_0002537>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002548> (end, days post coitum)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002548> <http://purl.obolibrary.org/obo/RO_0002538>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002549> (start, weeks post birth)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002549> <http://purl.obolibrary.org/obo/RO_0002537>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002550> (end, weeks post birth)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002550> <http://purl.obolibrary.org/obo/RO_0002538>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002560> (is asymmetric relational form of process class)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002560> <http://purl.obolibrary.org/obo/RO_0002562>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002561> (is symmetric relational form of process class)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002561> <http://purl.obolibrary.org/obo/RO_0002562>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002562> (is relational form of process class)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002562> <http://purl.obolibrary.org/obo/RO_0002594>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002575> (is direct form of)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002575> <http://purl.obolibrary.org/obo/RO_0002422>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002579> (is indirect form of)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002579> <http://purl.obolibrary.org/obo/RO_0002422>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002580> (logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002580> <http://purl.obolibrary.org/obo/RO_0002416>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002581> (is a defining property chain axiom)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002581> <http://purl.obolibrary.org/obo/RO_0002580>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002582> (is a defining property chain axiom where second argument is reflexive)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002582> <http://purl.obolibrary.org/obo/RO_0002581>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002594> (is relational form of a class)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002594> <http://purl.obolibrary.org/obo/RO_0002422>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002601> (logical macro assertion involving identity)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002601> <http://purl.obolibrary.org/obo/RO_0002416>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002602> (in approximate one to one relationship with)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002602> <http://purl.obolibrary.org/obo/RO_0002601>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002603> (is approximately equivalent to)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002603> <http://purl.obolibrary.org/obo/RO_0002602>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002604> (is opposite of)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002604> <http://purl.obolibrary.org/obo/RO_0002602>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002605> (is indistinguishable from)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002605> <http://purl.obolibrary.org/obo/RO_0002603>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002611> (evidential logical macro assertion on an axiom)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002611> <http://purl.obolibrary.org/obo/RO_0002580>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002612> (axiom has evidence)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002612> <http://purl.obolibrary.org/obo/RO_0002611>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002613> (axiom contradicted by evidence)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002613> <http://purl.obolibrary.org/obo/RO_0002611>)\n\n# Annotation Property: <http://purl.obolibrary.org/obo/RO_0002617> (is representative IRI for equivalence set)\n\nSubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/RO_0002617> <http://purl.obolibrary.org/obo/RO_0002601>)\n\n\n############################\n# Object Properties\n############################\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002008> (coincident with)\n\nObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002008> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/BFO_0000002> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000053> <http://purl.obolibrary.org/obo/PATO_0001199>)))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002103> (synapsed by)\n\nObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002103> ObjectUnionOf(<http://purl.obolibrary.org/obo/CL_0000540> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CL_0000540>)))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002132> (has fasciculating neuron projection)\n\nObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002132> ObjectUnionOf(<http://purl.obolibrary.org/obo/CL_0000540> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/CL_0000540>)))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002170> (connected to)\n\nObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002170> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/RO_0002577>))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002176> (connects)\n\nObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002176> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/RO_0002577>))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002207> (directly develops from)\n\nObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002207> ObjectUnionOf(<http://purl.obolibrary.org/obo/CARO_0010000> <http://purl.obolibrary.org/obo/CL_0000000>))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002333> (enabled by)\n\nSubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002333> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002215>))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002351> (has member)\n\nIrreflexiveObjectProperty(<http://purl.obolibrary.org/obo/RO_0002351>)\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002378> (anabranch of)\n\nSubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002378> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002376>))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002380> (branching part of)\n\nObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002380> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000053> <http://purl.obolibrary.org/obo/PATO_0000402>))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0002425> (differs in attribute of)\n\nObjectPropertyRange(<http://purl.obolibrary.org/obo/RO_0002425> ObjectUnionOf(<http://purl.obolibrary.org/obo/BFO_0000004> <http://purl.obolibrary.org/obo/BFO_0000015>))\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0009001> (has substance added)\n\nIrreflexiveObjectProperty(<http://purl.obolibrary.org/obo/RO_0009001>)\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0009002> (has substance removed)\n\nIrreflexiveObjectProperty(<http://purl.obolibrary.org/obo/RO_0009002>)\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0009003> (immersed in)\n\nIrreflexiveObjectProperty(<http://purl.obolibrary.org/obo/RO_0009003>)\n\n# Object Property: <http://purl.obolibrary.org/obo/RO_0009005> (has primary substance added)\n\nIrreflexiveObjectProperty(<http://purl.obolibrary.org/obo/RO_0009005>)\n\n\n\n############################\n# Classes\n############################\n\n# Class: <http://purl.obolibrary.org/obo/BFO_0000002> (continuant)\n\nDisjointClasses(<http://purl.obolibrary.org/obo/BFO_0000002> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000003>))\n\n# Class: <http://purl.obolibrary.org/obo/BFO_0000003> (occurrent)\n\nDisjointClasses(<http://purl.obolibrary.org/obo/BFO_0000003> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000002>))\n\n# Class: <http://purl.obolibrary.org/obo/BFO_0000040> (material entity)\n\nDisjointClasses(<http://purl.obolibrary.org/obo/BFO_0000040> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/BFO_0000141>))\n\n# Class: <http://purl.obolibrary.org/obo/BFO_0000141> (immaterial entity)\n\nDisjointClasses(<http://purl.obolibrary.org/obo/BFO_0000141> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/BFO_0000040>))\n\n# Class: <http://purl.obolibrary.org/obo/GO_0004842> (ubiquitin-protein ligase activity)\n\nSubClassOf(<http://purl.obolibrary.org/obo/GO_0004842> ObjectHasSelf(<http://purl.obolibrary.org/obo/RO_0002482>))\n\n# Class: <http://purl.obolibrary.org/obo/GO_0016301> (kinase activity)\n\nSubClassOf(<http://purl.obolibrary.org/obo/GO_0016301> ObjectHasSelf(<http://purl.obolibrary.org/obo/RO_0002481>))\n\n# Class: <http://purl.obolibrary.org/obo/GO_0044403> (symbiosis, encompassing mutualism through parasitism)\n\nSubClassOf(<http://purl.obolibrary.org/obo/GO_0044403> ObjectHasSelf(<http://purl.obolibrary.org/obo/RO_0002465>))\n\n# Class: <http://purl.obolibrary.org/obo/GO_0072519> (parasitism)\n\nSubClassOf(<http://purl.obolibrary.org/obo/GO_0072519> ObjectHasSelf(<http://purl.obolibrary.org/obo/RO_0002468>))\n\n# Class: <http://purl.obolibrary.org/obo/GO_0085030> (mutualism)\n\nSubClassOf(<http://purl.obolibrary.org/obo/GO_0085030> ObjectHasSelf(<http://purl.obolibrary.org/obo/RO_0002467>))\n\n# Class: <http://purl.obolibrary.org/obo/GO_0085031> (commensalism)\n\nSubClassOf(<http://purl.obolibrary.org/obo/GO_0085031> ObjectHasSelf(<http://purl.obolibrary.org/obo/RO_0002466>))\n\n\nSubClassOf(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002566> <http://purl.obolibrary.org/obo/BFO_0000040>) ObjectUnionOf(ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000056> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002418> <http://purl.obolibrary.org/obo/BFO_0000015>)) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000056> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002418> <http://purl.obolibrary.org/obo/BFO_0000015>)))))\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/BFO_0000055> <http://purl.obolibrary.org/obo/RO_0000052>) <http://purl.obolibrary.org/obo/RO_0000057>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0001025> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0001025>)) <http://purl.obolibrary.org/obo/RO_0002379>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/RO_0002481> <http://purl.obolibrary.org/obo/RO_0002400>) <http://purl.obolibrary.org/obo/RO_0002447>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/RO_0002482> <http://purl.obolibrary.org/obo/RO_0002400>) <http://purl.obolibrary.org/obo/RO_0002480>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002327> <http://purl.obolibrary.org/obo/RO_0002211> <http://purl.obolibrary.org/obo/RO_0002333>) <http://purl.obolibrary.org/obo/RO_0002448>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002327> <http://purl.obolibrary.org/obo/RO_0002406> <http://purl.obolibrary.org/obo/RO_0002333>) <http://purl.obolibrary.org/obo/RO_0002450>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002327> <http://purl.obolibrary.org/obo/RO_0002408> <http://purl.obolibrary.org/obo/RO_0002333>) <http://purl.obolibrary.org/obo/RO_0002449>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002327> <http://purl.obolibrary.org/obo/RO_0002411> <http://purl.obolibrary.org/obo/RO_0002233>) <http://purl.obolibrary.org/obo/RO_0002566>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002327> <http://purl.obolibrary.org/obo/RO_0002411> <http://purl.obolibrary.org/obo/RO_0002333>) <http://purl.obolibrary.org/obo/RO_0002566>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002461> <http://purl.obolibrary.org/obo/RO_0002465> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002461>)) <http://purl.obolibrary.org/obo/RO_0002440>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002461> <http://purl.obolibrary.org/obo/RO_0002466> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002461>)) <http://purl.obolibrary.org/obo/RO_0002441>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002461> <http://purl.obolibrary.org/obo/RO_0002467> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002461>)) <http://purl.obolibrary.org/obo/RO_0002442>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002461> <http://purl.obolibrary.org/obo/RO_0002468> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002461>)) <http://purl.obolibrary.org/obo/RO_0002443>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002462> <http://purl.obolibrary.org/obo/RO_0002468> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002463>)) <http://purl.obolibrary.org/obo/RO_0002444>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002583> <http://purl.obolibrary.org/obo/BFO_0000062> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002583>)) <http://purl.obolibrary.org/obo/RO_0002496>)\nSubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0002593> <http://purl.obolibrary.org/obo/BFO_0000063> ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002593>)) <http://purl.obolibrary.org/obo/RO_0002497>)\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf(<http://purl.obolibrary.org/obo/BFO_0000066>) <http://purl.obolibrary.org/obo/RO_0002234>) <http://purl.obolibrary.org/obo/RO_0003000>)\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf(<http://purl.obolibrary.org/obo/RO_0002176>) <http://purl.obolibrary.org/obo/RO_0002176>) <http://purl.obolibrary.org/obo/RO_0002170>)\nDLSafeRule(Annotation(<http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled> \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ClassAtom(<http://purl.obolibrary.org/obo/GO_0003674> Variable(<http://purl.obolibrary.org/obo/ro.owl#x>)) ClassAtom(<http://purl.obolibrary.org/obo/GO_0003674> Variable(<http://purl.obolibrary.org/obo/ro.owl#y>)) ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002578> Variable(<http://purl.obolibrary.org/obo/ro.owl#x>) Variable(<http://purl.obolibrary.org/obo/ro.owl#y>)) ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002327> Variable(<http://purl.obolibrary.org/obo/ro.owl#z>) Variable(<http://purl.obolibrary.org/obo/ro.owl#y>)))Head(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002233> Variable(<http://purl.obolibrary.org/obo/ro.owl#x>) Variable(<http://purl.obolibrary.org/obo/ro.owl#z>))))\nDLSafeRule(Annotation(<http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled> \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X) part_of complex(Y) enables MF(Z) -> X contributes_to Z\"^^xsd:string) Annotation(rdfs:label \"contrib to MF\"^^xsd:string) Body(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/BFO_0000050> Variable(<http://purl.obolibrary.org/obo/ro.owl#x>) Variable(<http://purl.obolibrary.org/obo/ro.owl#y>)) ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002327> Variable(<http://purl.obolibrary.org/obo/ro.owl#y>) Variable(<http://purl.obolibrary.org/obo/ro.owl#z>)) ClassAtom(<http://purl.obolibrary.org/obo/GO_0003674> Variable(<http://purl.obolibrary.org/obo/ro.owl#z>)))Head(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002326> Variable(<http://purl.obolibrary.org/obo/ro.owl#x>) Variable(<http://purl.obolibrary.org/obo/ro.owl#z>))))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002327> Variable(<urn:swrl#x>) Variable(<urn:swrl#y>)) ObjectPropertyAtom(<http://purl.obolibrary.org/obo/BFO_0000051> Variable(<urn:swrl#y>) Variable(<urn:swrl#z>)) ClassAtom(<http://purl.obolibrary.org/obo/GO_0003674> Variable(<urn:swrl#y>)))Head(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002327> Variable(<urn:swrl#x>) Variable(<urn:swrl#z>))))\nDLSafeRule(Annotation(<http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled> \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002327> Variable(<urn:swrl#x>) Variable(<urn:swrl#y>)) ObjectPropertyAtom(<http://purl.obolibrary.org/obo/BFO_0000050> Variable(<urn:swrl#y>) Variable(<urn:swrl#z>)) ClassAtom(<http://purl.obolibrary.org/obo/GO_0008150> Variable(<urn:swrl#z>)))Head(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002331> Variable(<urn:swrl#x>) Variable(<urn:swrl#z>))))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/BFO_0000066> Variable(<urn:swrl#y>) Variable(<urn:swrl#z>)) ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002327> Variable(<urn:swrl#x>) Variable(<urn:swrl#y>)))Head(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/BFO_0000050> Variable(<urn:swrl#x>) Variable(<urn:swrl#z>))))\nDLSafeRule(Body(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002213> Variable(<urn:swrl#y>) Variable(<urn:swrl#z>)) ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002212> Variable(<urn:swrl#x>) Variable(<urn:swrl#y>)))Head(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002212> Variable(<urn:swrl#x>) Variable(<urn:swrl#z>))))\nDLSafeRule(Body(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002213> Variable(<urn:swrl#x>) Variable(<urn:swrl#y>)) ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002212> Variable(<urn:swrl#y>) Variable(<urn:swrl#z>)))Head(ObjectPropertyAtom(<http://purl.obolibrary.org/obo/RO_0002212> Variable(<urn:swrl#x>) Variable(<urn:swrl#z>))))\n)
[Term]
id: BFO:0000002
name: continuant
def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." []
disjoint_from: BFO:0000003 ! occurrent
[Term]
id: BFO:0000003
name: occurrent
def: "An entity that has temporal parts and that happens, unfolds or develops through time." []
[Term]
id: BFO:0000004
name: independent continuant
def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." []
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000020 ! specifically dependent continuant
disjoint_from: BFO:0000031 ! generically dependent continuant
[Term]
id: BFO:0000005
name: obsolete dependent continuant
def: "A continuant that is either dependent on one or other independent continuant bearers or inheres in or is borne by other entities." []
is_a: ObsoleteClass ! Obsolete Class
is_obsolete: true
[Term]
id: BFO:0000015
name: process
def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." []
is_a: BFO:0000003 ! occurrent
[Term]
id: BFO:0000016
name: disposition
is_a: BFO:0000017 ! realizable entity
disjoint_from: BFO:0000023 ! role
[Term]
id: BFO:0000017
name: realizable entity
def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." []
is_a: BFO:0000020 ! specifically dependent continuant
disjoint_from: BFO:0000019 ! quality
[Term]
id: BFO:0000019
name: quality
is_a: BFO:0000020 ! specifically dependent continuant
[Term]
id: BFO:0000020
name: specifically dependent continuant
def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." []
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000031 ! generically dependent continuant
[Term]
id: BFO:0000023
name: role
def: "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts." []
is_a: BFO:0000017 ! realizable entity
[Term]
id: BFO:0000031
name: generically dependent continuant
def: "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." []
is_a: BFO:0000002 ! continuant
[Term]
id: BFO:0000034
name: function
is_a: BFO:0000016 ! disposition
[Term]
id: BFO:0000040
name: material entity
def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." []
is_a: BFO:0000004 ! independent continuant
disjoint_from: BFO:0000141 ! immaterial entity
[Term]
id: BFO:0000141
name: immaterial entity
is_a: BFO:0000004 ! independent continuant
[Term]
id: CARO:0000003
name: anatomical structure
is_a: CARO:0000006 ! material anatomical entity
property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl
[Term]
id: CARO:0000006
name: material anatomical entity
is_a: BFO:0000040 ! material entity
property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl
[Term]
id: CARO:0000007
name: immaterial anatomical entity
is_a: BFO:0000141 ! immaterial entity
[Term]
id: CARO:0000011
name: connected anatomical system
is_a: CARO:0000006 ! material anatomical entity
is_a: RO:0002577 ! system
[Term]
id: CARO:0000014
name: cell part
is_a: CARO:0000003 ! anatomical structure
property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl
property_value: IAO:0000589 "cell part (CARO)" xsd:string
[Term]
id: CARO:0001000
name: multi-cell-part structure
is_a: CARO:0000003 ! anatomical structure
property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl
[Term]
id: CARO:0001001
name: neuron projection bundle
is_a: CARO:0001000 ! multi-cell-part structure
property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl
[Term]
id: CARO:0010000
name: multicellular anatomical structure
is_a: CARO:0000003 ! anatomical structure
relationship: RO:0002207 CARO:0010000 ! directly develops from multicellular anatomical structure
property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl
[Term]
id: CL:0000000
name: cell
is_a: CARO:0000003 ! anatomical structure
relationship: RO:0002207 CL:0000000 ! directly develops from cell
property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
[Term]
id: CL:0000540
name: neuron
is_a: CL:0000000 ! cell
property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
[Term]
id: ENVO:00000428
name: biome
is_a: ENVO:01000254 ! environmental system
[Term]
id: ENVO:01000254
name: environmental system
is_a: RO:0002577 ! system
[Term]
id: GO:0003674
name: molecular_function
is_a: BFO:0000015 ! process
property_value: IAO:0000589 "molecular process" xsd:string
[Term]
id: GO:0003824
name: catalytic activity
is_a: GO:0003674 ! molecular_function
[Term]
id: GO:0004842
name: ubiquitin-protein ligase activity
is_a: GO:0019787 ! small conjugating protein ligase activity
[Term]
id: GO:0005634
name: nucleus
is_a: GO:0044464 ! cell part
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0007610
name: behavior
is_a: GO:0050896 ! response to stimulus
[Term]
id: GO:0007631
name: feeding behavior
is_a: GO:0007610 ! behavior
[Term]
id: GO:0008150
name: biological_process
is_a: BFO:0000015 ! process
[Term]
id: GO:0016020
name: membrane
is_a: GO:0044464 ! cell part
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0016301
name: kinase activity
is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups
[Term]
id: GO:0016740
name: transferase activity
is_a: GO:0003824 ! catalytic activity
[Term]
id: GO:0016772
name: transferase activity, transferring phosphorus-containing groups
is_a: GO:0016740 ! transferase activity
[Term]
id: GO:0016874
name: ligase activity
is_a: GO:0003824 ! catalytic activity
[Term]
id: GO:0016879
name: ligase activity, forming carbon-nitrogen bonds
is_a: GO:0016874 ! ligase activity
[Term]
id: GO:0016881
name: acid-amino acid ligase activity
is_a: GO:0016879 ! ligase activity, forming carbon-nitrogen bonds
[Term]
id: GO:0019787
name: small conjugating protein ligase activity
is_a: GO:0016881 ! acid-amino acid ligase activity
[Term]
id: GO:0030424
name: axon
is_a: GO:0043005 ! neuron projection
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0030425
name: dendrite
is_a: GO:0043005 ! neuron projection
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0042734
name: presynaptic membrane
is_a: GO:0016020 ! membrane
is_a: GO:0044456 ! synapse part
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0042995
name: cell projection
is_a: GO:0044464 ! cell part
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0043005
name: neuron projection
is_a: GO:0042995 ! cell projection
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0044403
name: symbiosis, encompassing mutualism through parasitism
is_a: GO:0044419 ! interspecies interaction between organisms
[Term]
id: GO:0044419
name: interspecies interaction between organisms
is_a: GO:0051704 ! multi-organism process
[Term]
id: GO:0044456
name: synapse part
is_a: CARO:0000014 ! cell part
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0044464
name: cell part
is_a: CARO:0000014 ! cell part
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0045202
name: synapse
is_a: CARO:0000014 ! cell part
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0045211
name: postsynaptic membrane
is_a: GO:0016020 ! membrane
is_a: GO:0044456 ! synapse part
property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl
[Term]
id: GO:0050896
name: response to stimulus
is_a: GO:0008150 ! biological_process
[Term]
id: GO:0051702
name: interaction with symbiont
is_a: GO:0044419 ! interspecies interaction between organisms
[Term]
id: GO:0051704
name: multi-organism process
is_a: GO:0008150 ! biological_process
[Term]
id: GO:0051705
name: multi-organism behavior
is_a: GO:0007610 ! behavior
is_a: GO:0051704 ! multi-organism process
[Term]
id: GO:0051816
name: acquisition of nutrients from other organism during symbiotic interaction
is_a: GO:0007631 ! feeding behavior
[Term]
id: GO:0051850
name: acquisition of nutrients from symbiont
is_a: GO:0051702 ! interaction with symbiont
is_a: GO:0051705 ! multi-organism behavior
is_a: GO:0051816 ! acquisition of nutrients from other organism during symbiotic interaction
[Term]
id: GO:0072519
name: parasitism
is_a: GO:0044403 ! symbiosis, encompassing mutualism through parasitism
[Term]
id: GO:0085030
name: mutualism
is_a: GO:0044403 ! symbiosis, encompassing mutualism through parasitism
[Term]
id: GO:0085031
name: commensalism
is_a: GO:0044403 ! symbiosis, encompassing mutualism through parasitism
[Term]
id: ObsoleteClass
name: Obsolete Class
[Term]
id: PATO:0000001
name: quality
is_a: BFO:0000020 ! specifically dependent continuant
property_value: IAO:0000589 "quality (PATO)" xsd:string
[Term]
id: PATO:0000051
name: morphology
is_a: BFO:0000019 ! quality
is_a: PATO:0001241 ! physical object quality
[Term]
id: PATO:0000052
name: shape
is_a: PATO:0000051 ! morphology
[Term]
id: PATO:0000141
name: structure
is_a: PATO:0000051 ! morphology
[Term]
id: PATO:0000402
name: branched
is_a: PATO:0002009 ! branchiness
[Term]
id: PATO:0001199
name: linear
is_a: PATO:0000052 ! shape
[Term]
id: PATO:0001241
name: physical object quality
is_a: PATO:0000001 ! quality
[Term]
id: PATO:0002009
name: branchiness
is_a: PATO:0000052 ! shape
[Term]
id: PATO:0002124
name: laminar
is_a: PATO:0000141 ! structure
[Term]
id: RO:0002310
name: exposure event or process
def: "A process occurring within or in the vicinity of an organism that exerts some causal influence on the organism via the interaction between an exposure stimulus and an exposure receptor. The exposure stimulus may be a process, material entity or condition (for example, lack of nutrients). The exposure receptor can be an organism, organism population or a part of an organism." []
is_a: BFO:0000015 ! process
property_value: http://purl.org/dc/elements/1.1/creator "Chris Mungall" xsd:string
property_value: IAO:0000112 "An exposure event in which a human is exposed to particulate matter in the air. Here the exposure stimulus/stress is the particulate matter, the receptor is the airways and lungs of the human," xsd:string
property_value: IAO:0000112 "An exposure event in which a plant is provided with fertilizer. The exposure receptor is the root system of the plant, the stimulus is the fertilizing chemical, the route is via the soil, possibly mediated by symbotic microbes." xsd:anyURI
property_value: IAO:0000116 "This class is intended as a grouping for various domain and species-specific exposure classes. The ExO class http://purl.obolibrary.org/obo/ExO_0000002 'exposure event' assumes that all exposures involve stressors, which limits the applicability of this class to 'positive' exposures, e.g. exposing a plant to beneficial growing conditions." xsd:string
property_value: seeAlso https://github.com/oborel/obo-relations/pull/173 xsd:anyURI
created_by: cjm
creation_date: 2017-06-05T17:55:39Z
[Term]
id: RO:0002532
name: sequentially ordered entity
def: "Any entity that is ordered in discrete units along a linear axis." []
relationship: RO:0002524 RO:0002533 ! has subsequence sequence atomic unit
property_value: IAO:0000117 "Chris Mungall" xsd:string
[Term]
id: RO:0002533
name: sequence atomic unit
def: "Any individual unit of a collection of like units arranged in a linear order" []
is_a: RO:0002532 ! sequentially ordered entity
property_value: IAO:0000117 "Chris Mungall" xsd:string
property_value: IAO:0000232 "An individual unit can be a molecular entity such as a base pair, or an abstract entity, such as the abstraction of a base pair." xsd:string
[Term]
id: RO:0002534
name: sequence bearer
def: "Any entity that can be divided into parts such that each part is an atomical unit of a sequence" []
is_a: RO:0002532 ! sequentially ordered entity
property_value: IAO:0000117 "Chris Mungall" xsd:string
property_value: IAO:0000232 "Sequence bearers can be molecular entities, such as a portion of a DNA molecule, or they can be abstract entities, such as an entity representing all human sonic hedgehog regions of the genome with a particular DNA sequence." xsd:string
[Term]
id: RO:0002577
name: system
def: "A material entity consisting of multiple components that are causally integrated." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000116 "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" xsd:string
property_value: IAO:0000117 "Chris Mungall" xsd:string
property_value: IAO:0000119 http://www.jbiomedsem.com/content/4/1/43 xsd:string
[Typedef]
id: BFO:0000050
name: part of
def: "a core relation that holds between a part and its whole" []
property_value: IAO:0000111 "is part of" xsd:string
property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string
property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string
property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string
property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string
property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string
property_value: IAO:0000118 "part_of" xsd:string
property_value: RO:0001900 RO:0001901
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf
property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string
is_transitive: true
is_a: RO:0002131 ! overlaps
inverse_of: BFO:0000051 ! has part
[Typedef]
id: BFO:0000051
name: has part
def: "a core relation that holds between a whole and its part" []
property_value: IAO:0000111 "has part" xsd:string
property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string
property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string
property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string
property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string
property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string
property_value: IAO:0000118 "has_part" xsd:string
property_value: RO:0001900 RO:0001901
is_transitive: true
is_a: RO:0002131 ! overlaps
[Typedef]
id: BFO:0000054
name: realized in
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
property_value: IAO:0000111 "realized in" xsd:string
property_value: IAO:0000112 "this disease is realized in this disease course" xsd:string
property_value: IAO:0000112 "this fragility is realized in this shattering" xsd:string
property_value: IAO:0000112 "this investigator role is realized in this investigation" xsd:string
property_value: IAO:0000118 "is realized by" xsd:string
property_value: IAO:0000118 "realized_in" xsd:string
property_value: IAO:0000600 "[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])" xsd:string
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl
domain: BFO:0000017 ! realizable entity
range: BFO:0000015 ! process
inverse_of: BFO:0000055 ! realizes
[Typedef]
id: BFO:0000055
name: realizes
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
property_value: IAO:0000111 "realizes" xsd:string
property_value: IAO:0000112 "this disease course realizes this disease" xsd:string
property_value: IAO:0000112 "this investigation realizes this investigator role" xsd:string
property_value: IAO:0000112 "this shattering realizes this fragility" xsd:string
property_value: IAO:0000600 "to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])" xsd:string
property_value: isDefinedBy http://purl.obolibrary.org/obo/iao.owl
domain: BFO:0000015 ! process
range: BFO:0000017 ! realizable entity
[Typedef]
id: BFO:0000060
name: obsolete preceded by
comment: accidentally included in BFO 1.2 proposal\n - should have been BFO_0000062
is_transitive: true
[Typedef]
id: BFO:0000062
name: preceded by
def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." []
subset: ro-eco
property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string
property_value: IAO:0000111 "preceded by" xsd:string
property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string
property_value: IAO:0000118 "is preceded by" xsd:string
property_value: IAO:0000118 "preceded_by" xsd:string
domain: BFO:0000003 ! occurrent
range: BFO:0000003 ! occurrent
holds_over_chain: BFO:0000050 BFO:0000062
holds_over_chain: RO:0002091 BFO:0000062
holds_over_chain: RO:0002092 BFO:0000062
is_transitive: true
is_a: RO:0002086 ! ends after
inverse_of: BFO:0000063 ! precedes
[Typedef]
id: BFO:0000063
name: precedes
def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." []
subset: ro-eco
property_value: IAO:0000111 "precedes" xsd:string
domain: BFO:0000003 ! occurrent
range: BFO:0000003 ! occurrent
holds_over_chain: BFO:0000050 BFO:0000063
holds_over_chain: RO:0002092 BFO:0000063
is_transitive: true
is_a: RO:0002222 ! temporally related to
[Typedef]
id: BFO:0000066
name: occurs in
def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" []
comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant
property_value: IAO:0000111 "occurs in" xsd:string
property_value: IAO:0000118 "occurs_in" xsd:string
property_value: IAO:0000118 "unfolds in" xsd:string
property_value: IAO:0000118 "unfolds_in" xsd:string
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl
domain: BFO:0000003 ! occurrent
range: BFO:0000004 ! independent continuant
holds_over_chain: BFO:0000050 BFO:0000066
inverse_of: BFO:0000067 ! contains process
transitive_over: BFO:0000050 ! part of
[Typedef]
id: BFO:0000067
name: contains process
def: "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" []
comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant
property_value: IAO:0000111 "site of" xsd:string
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl
[Typedef]
id: R0:0009004
name: has consumer
def: "'has consumer' is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect." []
property_value: IAO:0000112 "sardine has consumer some homo sapiens" xsd:string
property_value: IAO:0000114 IAO:0000428
property_value: IAO:0000117 "Damion Dooley" xsd:string
[Typedef]
id: RO:0000052
name: inheres in
def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" []
property_value: IAO:0000111 "inheres in" xsd:string
property_value: IAO:0000112 "this fragility inheres in this vase" xsd:string
property_value: IAO:0000112 "this red color inheres in this apple" xsd:string
property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string
property_value: IAO:0000118 "inheres_in" xsd:string
property_value: RO:0001900 RO:0001901
is_a: RO:0002314 ! inheres in part of
inverse_of: RO:0000053 ! bearer of
[Typedef]
id: RO:0000053
name: bearer of
def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" []
property_value: IAO:0000111 "bearer of" xsd:string
property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string
property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string
property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string
property_value: IAO:0000118 "bearer_of" xsd:string
property_value: IAO:0000118 "is bearer of" xsd:string
property_value: RO:0001900 RO:0001901
range: BFO:0000020 ! specifically dependent continuant
[Typedef]
id: RO:0000056
name: participates in
def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" []
property_value: IAO:0000111 "participates in" xsd:string
property_value: IAO:0000112 "this blood clot participates in this blood coagulation" xsd:string
property_value: IAO:0000112 "this input material (or this output material) participates in this process" xsd:string
property_value: IAO:0000112 "this investigator participates in this investigation" xsd:string
property_value: IAO:0000118 "participates_in" xsd:string
domain: BFO:0000002 ! continuant
range: BFO:0000003 ! occurrent
inverse_of: RO:0000057 ! has participant
[Typedef]
id: RO:0000057
name: has participant
def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" []
property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:has_participant xsd:string
property_value: IAO:0000111 "has participant" xsd:string
property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string
property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string
property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string
property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string
property_value: IAO:0000118 "has_participant" xsd:string
domain: BFO:0000003 ! occurrent
range: BFO:0000002 ! continuant
holds_over_chain: BFO:0000051 RO:0000057
[Typedef]
id: RO:0000058
name: is concretized as
def: "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants." []
property_value: IAO:0000112 "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)." xsd:string
property_value: IAO:0000112 "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)." xsd:string
domain: BFO:0000031 ! generically dependent continuant
range: BFO:0000020 ! specifically dependent continuant
inverse_of: RO:0000059 ! concretizes
[Typedef]
id: RO:0000059
name: concretizes
def: "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant." []
property_value: IAO:0000112 "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)." xsd:string
property_value: IAO:0000112 "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)." xsd:string
domain: BFO:0000020 ! specifically dependent continuant
range: BFO:0000031 ! generically dependent continuant
[Typedef]
id: RO:0000079
name: function of
def: "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this catalysis function is a function of this enzyme" xsd:string
property_value: IAO:0000116 "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists." xsd:string
property_value: IAO:0000118 "function_of" xsd:string
property_value: IAO:0000118 "is function of" xsd:string
domain: BFO:0000034 ! function
is_a: RO:0000052 ! inheres in
inverse_of: RO:0000085 ! has function
[Typedef]
id: RO:0000080
name: quality of
def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string
property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string
property_value: IAO:0000118 "is quality of" xsd:string
property_value: IAO:0000118 "quality_of" xsd:string
is_a: RO:0000052 ! inheres in
inverse_of: RO:0000086 ! has quality
[Typedef]
id: RO:0000081
name: role of
def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this investigator role is a role of this person" xsd:string
property_value: IAO:0000116 "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string
property_value: IAO:0000118 "is role of" xsd:string
property_value: IAO:0000118 "role_of" xsd:string
is_a: RO:0000052 ! inheres in
inverse_of: RO:0000087 ! has role
[Typedef]
id: RO:0000085
name: has function
def: "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)" xsd:string
property_value: IAO:0000116 "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists." xsd:string
property_value: IAO:0000118 "has_function" xsd:string
domain: BFO:0000004 ! independent continuant
range: BFO:0000034 ! function
is_a: RO:0000053 ! bearer of
[Typedef]
id: RO:0000086
name: has quality
def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this apple has quality this red color" xsd:string
property_value: IAO:0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string
property_value: IAO:0000118 "has_quality" xsd:string
range: BFO:0000019 ! quality
is_a: RO:0000053 ! bearer of
[Typedef]
id: RO:0000087
name: has role
def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this person has role this investigator role (more colloquially: this person has this role of investigator)" xsd:string
property_value: IAO:0000116 "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." xsd:string
property_value: IAO:0000118 "has_role" xsd:string
domain: BFO:0000004 ! independent continuant
range: BFO:0000023 ! role
is_a: RO:0000053 ! bearer of
[Typedef]
id: RO:0000091
name: has disposition
def: "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence" []
domain: BFO:0000004 ! independent continuant
range: BFO:0000016 ! disposition
is_a: RO:0000053 ! bearer of
inverse_of: RO:0000092 ! disposition of
[Typedef]
id: RO:0000092
name: disposition of
def: "inverse of has disposition" []
subset: RO:0002259
is_a: RO:0000052 ! inheres in
[Typedef]
id: RO:0000300
name: in neural circuit with
def: "A relation that holds between two neurons connected directly via a synapse, or indirectly via a series of synaptically connected neurons." []
property_value: http://purl.org/spar/cito/citesAsAuthority http://www.ncbi.nlm.nih.gov/pubmed/22402613
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
property_value: IAO:0000426 "(forall (?x ?y) \n (iff \n (neural_circuit_path ?x ?y)\n (and\n (\"neuron ; CL_0000540\" ?x)\n (\"neuron ; CL_0000540\" ?y)\n (or \n (synapsed_by ?x ?y) \n (synapsed_to ?x ?y))))) \n\n(forall (...s ?x ?y ?z) \n (iff \n (neural_circuit_path ...s ?x ?y ?z)\n (and\n (neural_circuit_path ...s ?x ?y)\n (\"neuron ; CL_0000540\" ?z)\n (or \n (synapsed_by ?y ?z) \n (synapsed_to ?y ?z))))) \n\n(forall (?x ?y) \n (iff \n (in_neural_circuit_with ?x ?y)\n (exists (...s)\n (neural_circuit_path ?x ...s ?y)))) " xsd:string
property_value: RO:0001900 RO:0001901
is_transitive: true
[Typedef]
id: RO:0000301
name: upstream in neural circuit with
def: "A relation that holds between a neuron that is synapsed_to another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_to the next." []
property_value: http://purl.org/spar/cito/citesAsAuthority http://www.ncbi.nlm.nih.gov/pubmed/22402613
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
property_value: IAO:0000426 "(forall (?x ?y) \n (iff \n (upstream_neural_circuit_path ?x ?y)\n (and\n (\"neuron ; CL_0000540\" ?x)\n (\"neuron ; CL_0000540\" ?y)\n (synapsed_to ?x ?y))))\n\n\n(forall (...s ?x ?y ?z) \n (iff \n (upstream_neural_circuit_path ...s ?x ?y ?z )\n (and\n (upstream_neural_circuit_path ...s ?x ?y)\n (\"neuron ; CL_0000540\" ?z)\n (synapsed_to ?y ?z))))\n \n(forall (?x ?y) \n (iff \n (upstream_in_neural_circuit_with ?x ?y)\n (exists (...s)\n (upstream_neural_circuit_path ?x ...s ?y))))" xsd:string
property_value: RO:0001900 RO:0001901
is_transitive: true
is_a: RO:0000300 ! in neural circuit with
[Typedef]
id: RO:0000302
name: downstream in neural circuit with
def: "A relation that holds between a neuron that is synapsed_to another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_to the next." []
property_value: http://purl.org/spar/cito/citesAsAuthority http://www.ncbi.nlm.nih.gov/pubmed/22402613
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
property_value: IAO:0000426 "(forall (?x ?y) \n (iff \n (downstream_neural_circuit_path ?x ?y)\n (and\n (\"neuron ; CL_0000540\" ?x)\n (\"neuron ; CL_0000540\" ?y)\n (synapsed_by ?x ?y))))\n\n\n(forall (...s ?x ?y ?z) \n (iff \n (downstream_neural_circuit_path ...s ?x ?y ?z )\n (and\n (downstream_neural_circuit_path ...s ?x ?y)\n (\"neuron ; CL_0000540\" ?z)\n (synapsed_by ?y ?z))))\n \n(forall (?x ?y) \n (iff \n (downstream_in_neural_circuit_with ?x ?y)\n (exists (...s)\n (downstream_neural_circuit_path ?x ...s ?y)))) \n " xsd:string
property_value: RO:0001900 RO:0001901
is_transitive: true
is_a: RO:0000300 ! in neural circuit with
[Typedef]
id: RO:0001000
name: derives from
def: "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity" []
subset: ro-eco
property_value: IAO:0000112 "this cell derives from this parent cell (cell division)" xsd:string
property_value: IAO:0000112 "this nucleus derives from this parent nucleus (nuclear division)" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'." xsd:string
property_value: IAO:0000118 "derives_from" xsd:string
property_value: IAO:0000232 "This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations." xsd:string
inverse_of: RO:0001001 ! derives into
[Typedef]
id: RO:0001001
name: derives into
def: "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity" []
subset: ro-eco
property_value: IAO:0000112 "this parent cell derives into this cell (cell division)" xsd:string
property_value: IAO:0000112 "this parent nucleus derives into this nucleus (nuclear division)" xsd:string
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000116 "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'." xsd:string
property_value: IAO:0000118 "derives_into" xsd:string
[Typedef]
id: RO:0001015
name: location of
def: "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" []
property_value: IAO:0000111 "is location of" xsd:string
property_value: IAO:0000112 "my head is the location of my brain" xsd:string
property_value: IAO:0000112 "this cage is the location of this rat" xsd:string
property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string
property_value: IAO:0000118 "location_of" xsd:string
property_value: RO:0001900 RO:0001901
is_transitive: true
inverse_of: RO:0001025 ! located in
[Typedef]
id: RO:0001018
name: contained in
subset: ro-eco
property_value: IAO:0000111 "contained in" xsd:string
property_value: IAO:0000116 "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." xsd:string
property_value: IAO:0000116 "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" xsd:string
property_value: IAO:0000116 "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " xsd:string
property_value: IAO:0000118 "contained_in" xsd:string
property_value: RO:0001900 RO:0001901
domain: BFO:0000040 ! material entity
range: BFO:0000004 ! independent continuant
holds_over_chain: RO:0001025 BFO:0000050
inverse_of: RO:0001019 ! contains
[Typedef]
id: RO:0001019
name: contains
subset: ro-eco
property_value: IAO:0000111 "contains" xsd:string
property_value: RO:0001900 RO:0001901
[Typedef]
id: RO:0001020
name: is allergic trigger for
def: "A relation between a material entity and a condition (a phenotype or disease) of a host, in which the material entity is not part of the host, and is considered harmless to non-allergic hosts, and the condition results in pathological processes that include an abnormally strong immune response against the material entity." []
property_value: IAO:0000112 "penicillin (CHEBI:17334) is allergic trigger for penicillin allergy (DOID:0060520)" xsd:string
domain: BFO:0000040 ! material entity
is_a: RO:0003302 ! causes or contributes to condition
inverse_of: RO:0001022 ! has allergic trigger
[Typedef]
id: RO:0001021
name: is autoimmune trigger for
def: "A relation between a material entity and a condition (a phenotype or disease) of a host, in which the material entity is part of the host itself, and the condition results in pathological processes that include an abnormally strong immune response against the material entity." []
domain: BFO:0000040 ! material entity
is_a: RO:0003302 ! causes or contributes to condition
inverse_of: RO:0001023 ! has autoimmune trigger
[Typedef]
id: RO:0001022
name: has allergic trigger
def: "A relation between a condition (a phenotype or disease) of a host and a material entity, in which the material entity is not part of the host, and is considered harmless to non-allergic hosts, and the condition results in pathological processes that include an abnormally strong immune response against the material entity." []
property_value: IAO:0000112 "penicillin allergy (DOID:0060520) has allergic trigger penicillin (CHEBI:17334)" xsd:string
range: BFO:0000040 ! material entity
is_a: RO:0003302 ! causes or contributes to condition
[Typedef]
id: RO:0001023
name: has autoimmune trigger
def: "A relation between a condition (a phenotype or disease) of a host and a material entity, in which the material entity is part of the host itself, and the condition results in pathological processes that include an abnormally strong immune response against the material entity." []
range: BFO:0000040 ! material entity
is_a: RO:0003302 ! causes or contributes to condition
[Typedef]
id: RO:0001025
name: located in
def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" []
property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:located_in xsd:string
property_value: IAO:0000111 "located in" xsd:string
property_value: IAO:0000112 "my brain is located in my head" xsd:string
property_value: IAO:0000112 "this rat is located in this cage" xsd:string
property_value: IAO:0000116 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" xsd:string
property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string
property_value: IAO:0000118 "located_in" xsd:string
property_value: RO:0001900 RO:0001901
is_transitive: true
[Typedef]
id: RO:0002000
name: 2D boundary of
def: "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity" []
property_value: IAO:0000112 "the surface of my skin is a 2D boundary of my body" xsd:string
property_value: IAO:0000116 "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." xsd:string
property_value: IAO:0000116 "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." xsd:string
property_value: IAO:0000118 "2D_boundary_of" xsd:string
property_value: IAO:0000118 "boundary of" xsd:string
property_value: IAO:0000118 "is 2D boundary of" xsd:string
property_value: IAO:0000118 "is boundary of" xsd:string
property_value: RO:0001900 RO:0001901
is_a: RO:0002323 ! mereotopologically related to
inverse_of: RO:0002002 ! has 2D boundary
[Typedef]
id: RO:0002001
name: aligned with
property_value: IAO:0000114 IAO:0000125
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
property_value: RO:0001900 RO:0001901
is_transitive: true
[Typedef]
id: RO:0002002
name: has 2D boundary
def: "a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity" []
property_value: IAO:0000112 "my body has 2D boundary the surface of my skin" xsd:string
property_value: IAO:0000116 "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts." xsd:string
property_value: IAO:0000116 "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape." xsd:string
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
property_value: IAO:0000118 "has boundary" xsd:string
property_value: IAO:0000118 "has_2D_boundary" xsd:string
property_value: RO:0001900 RO:0001901
domain: BFO:0000040 ! material entity
range: BFO:0000141 ! immaterial entity
is_a: RO:0002323 ! mereotopologically related to
[Typedef]
id: RO:0002003
name: electrically_synapsed_to
def: "A relation that holds between two neurons that are electrically coupled via gap junctions." []
property_value: http://purl.org/spar/cito/citesAsAuthority http://www.ncbi.nlm.nih.gov/pubmed/22402613
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
is_a: RO:0000300 ! in neural circuit with
[Typedef]
id: RO:0002004
name: tracheates
def: "The relationship that holds between a trachea or tracheole and an antomical structure that is contained in (and so provides an oxygen supply to)." []
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
is_a: RO:0001018 ! contained in
[Typedef]
id: RO:0002005
name: innervated_by
property_value: http://purl.org/spar/cito/citesAsAuthority http://www.ncbi.nlm.nih.gov/pubmed/22402613 xsd:anyURI
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
inverse_of: RO:0002134 ! innervates
[Typedef]
id: RO:0002006
name: has synaptic terminal of
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
is_a: RO:0002131 ! overlaps
inverse_of: RO:0002130 ! has synaptic terminal in
[Typedef]
id: RO:0002007
name: bounding layer of
def: "X outer_layer_of Y iff:\n. X :continuant that bearer_of some PATO:laminar\n. X part_of Y\n. exists Z :surface\n. X has_boundary Z\n. Z boundary_of Y\n\nhas_boundary: http://purl.obolibrary.org/obo/RO_0002002\nboundary_of: http://purl.obolibrary.org/obo/RO_0002000" []
comment: A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.
subset: ro-eco
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
range: BFO:0000040 ! material entity
is_a: BFO:0000050 ! part of
[Typedef]
id: RO:0002008
name: coincident with
def: "A relation that holds between two linear structures that are approximately parallel to each other for their entire length and where either the two structures are adjacent to each other or one is part of the other." []
comment: Example: if we define region of chromosome as any subdivision of a chromosome along its long axis, then we can define a region of chromosome that contains only gene x as 'chromosome region' that coincident_with some 'gene x', where the term gene X corresponds to a genomic sequence.
subset: ro-eco
property_value: IAO:0000116 "Note from NCEAS meeting: consider changing primary label" xsd:string
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
is_a: RO:0002323 ! mereotopologically related to
[Typedef]
id: RO:0002009
name: cell expresses
def: "A relation that applies between a cell(c) and a gene(g) , where the process of 'transcription, DNA templated (GO_0006351)' is occuring in in cell c and that process has input gene g." []
property_value: http://purl.org/dc/elements/1.1/description "x 'cell expresses' y iff:\ncell(x)\nAND gene(y)\nAND exists some 'transcription, DNA templated (GO_0006351)'(t)\nAND t occurs_in x\nAND t has_input y" xsd:string
property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string
domain: CL:0000000 ! cell
is_a: RO:0002292 ! expresses
[Typedef]
id: RO:0002010
name: regulates in other organism
def: "x 'regulates in other organism' y if and only if: (x is the realization of a function to exert an effect on the frequency, rate or extent of y) AND (the agents of x are produced by organism o1 and the agents of y are produced by organism o2)." []