chore: 1.0.0-pre (#123)

mcanouil · Jan 27, 2024 · a85ac3c · a85ac3c
1 parent 60586de
commit a85ac3c
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Showing 12 changed files with 3,502 additions and 4,013 deletions.
diff --git a/.github/.devcontainer/bcftools/install.sh b/.github/.devcontainer/bcftools/install.sh
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-BCFTOOLS_VERSION=${VERSION:-"1.16"}
+BCFTOOLS_VERSION=${VERSION:-"1.19"}
 
 set -e
 

diff --git a/.github/.devcontainer/devcontainer.json b/.github/.devcontainer/devcontainer.json
@@ -9,23 +9,23 @@
 		"ghcr.io/devcontainers/features/common-utils:2": {
 			"installZsh": "true",
 			"username": "vscode",
-			"userUid": "1001",
-			"userGid": "1001",
+			"userUid": "1000",
+			"userGid": "1000",
 			"upgradePackages": "true"
 		},
 		"ghcr.io/devcontainers/features/git:1": {
 			"version": "latest",
 			"ppa": "false"
 		},
 		"ghcr.io/rocker-org/devcontainer-features/r-rig:1": {
-			"version": "4.2.0",
-			"vscodeRSupport": "full",
+			"version": "4.3.2",
+			"vscodeRSupport": "none",
 			"installDevTools": "false",
 			"installREnv": "true",
 			"installRMarkdown": "false"
 		},
 		"./bcftools": {
-			"version": "1.16"
+			"version": "1.19"
 		},
 		"./eggla": {
 			"version": "main"
@@ -41,7 +41,8 @@
 					"--no-save",
 					"--no-restore-data",
 					"--quiet"
-				]
+				],
+				"r.useRenvLibPath": true
 			}
 		}
 	}

diff --git a/.github/.devcontainer/eggla/R/lock.R b/.github/.devcontainer/eggla/R/lock.R
@@ -1,9 +1,10 @@
+pak::pkg_install("devtools")
 pkgs <- setdiff(rownames(old.packages(repos = "https://cloud.r-project.org/")), "pak")
 if (length(pkgs) > 0) pak::pkg_install(pkgs)
 
 lock_file <- ".github/.devcontainer/eggla/R/pkg.lock"
 pak::lockfile_create(
-  pkg = c(".", "data.table", "devtools", "languageserver", "httpgd", "svglite", "ragg"),
+  pkg = c(".", "data.table", "svglite", "ragg"),
   lockfile = lock_file,
   lib = NULL,
   upgrade = TRUE,