From d6b24f85182d816f51ee1174fcfce57f66ce1056 Mon Sep 17 00:00:00 2001 From: mccullen Date: Tue, 2 Feb 2021 09:03:06 -0500 Subject: [PATCH 1/2] Update README.md --- README.md | 32 -------------------------------- 1 file changed, 32 deletions(-) diff --git a/README.md b/README.md index c331fc3..161e721 100644 --- a/README.md +++ b/README.md @@ -4,35 +4,3 @@ * cr: Collection Readers. * cc: CAS Consumers * ae: Analysis Engines - -## Collection Readers -### - -## Ontology Attribute Descriptions -* Confidence: Created by dictionary lookup, not probabalistic algorithm, and is never set. -it will always be 0 with the default dictionary lookup procedure. The default procedure -is a strict lookup against a term in the dictionary and no lookup has any more validity -than any other, so it is pretty much meaningless. - * http://mail-archives.apache.org/mod_mbox/ctakes-dev/201801.mbox/browser -* Conditional (bool):Whether the relation is conditional/hypothetical. Example: "If the patient's tumor returns, we can treat it with Oxaliplatin." - This instantiates a manages/treats relation which should be marked as conditional=true, with the "if" marked as the cue. -* Generic (bool): Is the named entity or event used in a generic way or in the context of a person's -history? -* Polarity (-1 | 1): negated=-1 -* PartsOfSpeech (string): Comma separated list of the parts of speech tags in the text span - * https://www.ling.upenn.edu/courses/Fall_2003/ling001/penn_treebank_pos.html -* preferredText (string): preferredText is the preferred term. normally his is - the UMLS preferred name. -* refsem (string): -* codingScheme (string): -* score (int?):Word Sense disambiguation: if this named entity is assigned multiple -ontologyConcepts, the score represents how similar this sense is to surrounding senses - (higher scores = more likely to be the correct sense) -* subject ("patient"|"other"...): Who does the event or entity refer to? -* trueText (string): The actual text in the note (between beginIndex and endIndex). -* tui (string): -* uncertainty (0|1): Is the event or entity uncertain? 1=uncertain -* documentId (string): -* beginIndex (int): -* endIndex (int): - From 7e99b2070a8bba46fd81e82195b357af676493f5 Mon Sep 17 00:00:00 2001 From: mccullen Date: Tue, 2 Feb 2021 11:05:19 -0500 Subject: [PATCH 2/2] Update README.md --- README.md | 13 ++++++++----- 1 file changed, 8 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 161e721..74c7156 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,9 @@ -## Packages +# Documentation +The documentation for this package is located on the [wiki](https://github.com/mccullen/custom-components/wiki). + +# Package Descriptions +* cr: Collection Readers. +* cc: CAS Consumers. +* ae: Analysis Engines. * models: Simple model objects with getters/setters -* services: Anything with business/implementation logic that you may want to stub out -* cr: Collection Readers. -* cc: CAS Consumers -* ae: Analysis Engines +* services: Anything with business/implementation logic that you may want to stub out. The components (CRs, AEs, CCs) typically just capture the configuration parameters into model objects and delegate the rest of the work to these services.