csv.config.example.json

{
  "patientIdCsvPath": "Users/YourAccount/absolute/path/to/patient-mrns.csv",
  "commonExtractorArgs": {
    "dataDirectory": "Users/YourAccount/absolute/path/to/data/directory"
  },
  "notificationInfo": {
    "host": "smtp.example.com",
    "port": 587,
    "from": "sender@example.com",
    "to": [
      "demo@example.com",
      "test@example.com"
    ],
    "tlsRejectUnauthorized": true
  },
  "extractors": [
    {
      "label": "patient",
      "type": "CSVPatientExtractor",
      "constructorArgs": {
        "fileName": "patient-information.csv"
      }
    },
    {
      "label": "condition",
      "type": "CSVConditionExtractor",
      "constructorArgs": {
        "fileName": "condition-information.csv"
      }
    },
    {
      "label": "cancerDiseaseStatus",
      "type": "CSVCancerDiseaseStatusExtractor",
      "constructorArgs": {
        "fileName": "cancer-disease-status-information.csv"
      }
    },
    {
      "label": "clinicalTrialInformation",
      "type": "CSVClinicalTrialInformationExtractor",
      "constructorArgs": {
        "fileName": "clinical-trial-information.csv",
        "clinicalSiteID": "example-site-id"
      }
    },
    {
      "label": "treatmentPlanChange",
      "type": "CSVTreatmentPlanChangeExtractor",
      "constructorArgs": {
        "fileName": "treatment-plan-change-information.csv"
      }
    },
    {
      "label": "staging",
      "type": "CSVStagingExtractor",
      "constructorArgs": {
        "fileName": "staging-information.csv"
      }
    },
    {
      "label": "cancerRelatedMedicationAdministration",
      "type": "CSVCancerRelatedMedicationAdministrationExtractor",
      "constructorArgs": {
        "fileName": "cancer-related-medication-administration-information.csv"
      }
    },
    {
      "label": "cancerRelatedMedicationRequest",
      "type": "CSVCancerRelatedMedicationRequestExtractor",
      "constructorArgs": {
        "fileName": "cancer-related-medication-request-information.csv"
      }
    },
    {
      "label": "genericObservations",
      "type": "CSVObservationExtractor",
      "constructorArgs": {
        "fileName": "observation-information.csv"
      }
    },
    {
      "label": "genericProcedures",
      "type": "CSVProcedureExtractor",
      "constructorArgs": {
        "fileName": "procedure-information.csv"
      }
    },
    {
      "label": "adverseEvent",
      "type": "CSVAdverseEventExtractor",
      "constructorArgs": {
        "fileName": "adverse-event-information.csv"
      }
    },
    {
      "label": "ctcAdverseEvent",
      "type": "CSVCTCAdverseEventExtractor",
      "constructorArgs": {
        "fileName": "ctc-adverse-event-information.csv"
      }
    }
  ]
}