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samtools

This is the official development repository for samtools.

The original samtools package has been split into three separate but tightly coordinated projects:

  • htslib: C-library for handling high-throughput sequencing data
  • samtools: mpileup and other tools for handling SAM, BAM, CRAM
  • bcftools: calling and other tools for handling VCF, BCF

See also http://github.com/samtools/

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  • C 74.9%
  • Perl 20.3%
  • Lua 2.5%
  • Java 0.7%
  • C++ 0.7%
  • Python 0.6%
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