Bump the poetry-dependencies group with 12 updates

Bumps the poetry-dependencies group with 12 updates:

| Package | From | To |
| --- | --- | --- |
| [biopython](https://github.com/biopython/biopython) | `1.81` | `1.82` |
| [black](https://github.com/psf/black) | `23.12.0` | `23.12.1` |
| [coverage](https://github.com/nedbat/coveragepy) | `7.3.2` | `7.4.0` |
| [mypy](https://github.com/python/mypy) | `1.7.1` | `1.8.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.1.7` | `0.1.9` |
| [pytest](https://github.com/pytest-dev/pytest) | `7.4.3` | `7.4.4` |
| [ipykernel](https://github.com/ipython/ipykernel) | `6.27.1` | `6.28.0` |
| [importlib-metadata](https://github.com/python/importlib_metadata) | `7.0.0` | `7.0.1` |
| [jupyter-core](https://github.com/jupyter/jupyter_core) | `5.5.0` | `5.5.1` |
| [prompt-toolkit](https://github.com/prompt-toolkit/python-prompt-toolkit) | `3.0.42` | `3.0.43` |
| [psutil](https://github.com/giampaolo/psutil) | `5.9.6` | `5.9.7` |
| [setuptools](https://github.com/pypa/setuptools) | `69.0.2` | `69.0.3` |


Updates `biopython` from 1.81 to 1.82
- [Changelog](https://github.com/biopython/biopython/blob/master/NEWS.rst)
- [Commits](https://github.com/biopython/biopython/commits)

Updates `black` from 23.12.0 to 23.12.1
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](psf/black@23.12.0...23.12.1)

Updates `coverage` from 7.3.2 to 7.4.0
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](nedbat/coveragepy@7.3.2...7.4.0)

Updates `mypy` from 1.7.1 to 1.8.0
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.7.1...v1.8.0)

Updates `ruff` from 0.1.7 to 0.1.9
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@v0.1.7...v0.1.9)

Updates `pytest` from 7.4.3 to 7.4.4
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@7.4.3...7.4.4)

Updates `ipykernel` from 6.27.1 to 6.28.0
- [Release notes](https://github.com/ipython/ipykernel/releases)
- [Changelog](https://github.com/ipython/ipykernel/blob/main/CHANGELOG.md)
- [Commits](ipython/ipykernel@v6.27.1...v6.28.0)

Updates `importlib-metadata` from 7.0.0 to 7.0.1
- [Release notes](https://github.com/python/importlib_metadata/releases)
- [Changelog](https://github.com/python/importlib_metadata/blob/main/NEWS.rst)
- [Commits](python/importlib_metadata@v7.0.0...v7.0.1)

Updates `jupyter-core` from 5.5.0 to 5.5.1
- [Release notes](https://github.com/jupyter/jupyter_core/releases)
- [Changelog](https://github.com/jupyter/jupyter_core/blob/main/CHANGELOG.md)
- [Commits](jupyter/jupyter_core@v5.5.0...v5.5.1)

Updates `prompt-toolkit` from 3.0.42 to 3.0.43
- [Release notes](https://github.com/prompt-toolkit/python-prompt-toolkit/releases)
- [Changelog](https://github.com/prompt-toolkit/python-prompt-toolkit/blob/master/CHANGELOG)
- [Commits](prompt-toolkit/python-prompt-toolkit@3.0.42...3.0.43)

Updates `psutil` from 5.9.6 to 5.9.7
- [Changelog](https://github.com/giampaolo/psutil/blob/master/HISTORY.rst)
- [Commits](giampaolo/psutil@release-5.9.6...release-5.9.7)

Updates `setuptools` from 69.0.2 to 69.0.3
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst)
- [Commits](pypa/setuptools@v69.0.2...v69.0.3)

---
updated-dependencies:
- dependency-name: biopython
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: poetry-dependencies
- dependency-name: black
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: poetry-dependencies
- dependency-name: coverage
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: poetry-dependencies
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: poetry-dependencies
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: poetry-dependencies
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: poetry-dependencies
- dependency-name: ipykernel
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: poetry-dependencies
- dependency-name: importlib-metadata
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: poetry-dependencies
- dependency-name: jupyter-core
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: poetry-dependencies
- dependency-name: prompt-toolkit
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: poetry-dependencies
- dependency-name: psutil
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: poetry-dependencies
- dependency-name: setuptools
  dependency-type: indirect
  update-type: version-update:semver-patch
  dependency-group: poetry-dependencies
...

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