Has-proper-part and has-part usage Dron not compatible with RO

[matentzn]

To get DrOn to be fully compatible with RO, you should consider to migrate the following two relations:

Declaration(ObjectProperty(<http://www.obofoundry.org/ro/ro.owl#has_part>))
Declaration(ObjectProperty(<http://www.obofoundry.org/ro/ro.owl#has_proper_part>))

To their proper RO counterparts.

Originally, I thought that this needed changes to the DrOn builder pipeline:

dron/DrOn builder source code/dron-builder/src/main/scala/edu/uams/dbmi/redo/builder/DrOnBuilder.scala

but with a bit of luck, the DrOnBuilder.scala is generic enough to handle changes to DrOn as long as the rdfs:label has_proper_part is preserved:

Not 100% positive though, would need someone testing it.

[sjbost]

Team is investigating the source code.

[sjbost]

@dillerm and @hoganwr will look at Scala code in BitBucket repo. @LightGrenadier will check on access with Erik Schmidt for the previous people.

Looks like the lookup of the object property IRI by its rdfs:label is calling the SQL database.

[matentzn]

Note, this is now an easy fix @hoganwr as only the declarations remain - they can just be deleted.

[hoganwr]

Thanks for letting me know! Had I realized it I would have fixed in the most recent release LOL. Will take care of it ASAP.

…

On Fri, Dec 20, 2024 at 3:39 PM Nico Matentzoglu ***@***.***> wrote: Note, this is now an easy fix @hoganwr <https://github.com/hoganwr> as only the declarations remain - they can just be deleted. — Reply to this email directly, view it on GitHub <#3 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAJR55X6S7LTNQZZX3MZCWT2GSFC5AVCNFSM6AAAAABT74H65WVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDKNJXG42TAOBRGI> . You are receiving this because you were mentioned.Message ID: ***@***.***>

[hoganwr]

Actually, when you build the components, dron-ingredient.owl still uses it extensively. I think this is as simple as replacing it with the proper RO object property in the build scripts that create the three component OWL files. But it needs to be done and tested. Will work on this ASAP, but am currently working on the PATO import.