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Two classes for lorazepam? #45

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matentzn opened this issue Dec 20, 2024 · 3 comments
Open

Two classes for lorazepam? #45

matentzn opened this issue Dec 20, 2024 · 3 comments

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@matentzn
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http://purl.obolibrary.org/obo/CHEBI_52993
http://purl.obolibrary.org/obo/DRON_01002934

image

Should these (and similar cases) have been merged?

@hoganwr
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hoganwr commented Dec 23, 2024

We worked very hard to identify "no-brainer" mappings and replace DrOn IDs with ChEBI. I have no idea how we missed this one. Yes, we can fix this one, but in general it is a surprise and so until we see more like it, it will be hard to identify a systematic reason for the failure. We are limited to fixing them as people find them for the moment (although obviously we can try more basic matching).

@matentzn
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matentzn commented Dec 23, 2024

@hoganwr here are the ones that are matches based on string matching:

CHEBI:17833	Gentamicin	skos:exactMatch	DRON:01002946	gentamicin	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	gentamicin		
CHEBI:28304	Enoxaparin	skos:exactMatch	DRON:01002939	enoxaparin	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	enoxaparin		
CHEBI:28940	Cholecalciferol	skos:exactMatch	DRON:01002930	cholecalciferol	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	cholecalciferol		
CHEBI:29101	sodium(1+)	skos:exactMatch	DRON:01034861	sodium cation	semapv:LexicalMatching	oaklib	0.8	oio:hasExactSynonym	rdfs:label	sodium cation		
CHEBI:29287	gold atom	skos:exactMatch	DRON:01034801	gold		semapv:LexicalMatching	oaklib	0.8	oio:hasExactSynonym	rdfs:label	gold		
CHEBI:32026	Poloxamer	skos:exactMatch	DRON:01002941	poloxamer	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	poloxamer		
CHEBI:33341	titanium atom	skos:exactMatch	DRON:01034751	titanium	semapv:LexicalMatching	oaklib	0.8	oio:hasExactSynonym	rdfs:label	titanium		
CHEBI:52993	Lorazepam	skos:exactMatch	DRON:01002934	lorazepam	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	lorazepam		
CHEBI:75324	excipient	skos:exactMatch	DRON:00000029	excipient	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	excipient		
CHEBI:8397	Prenylamine	skos:exactMatch	DRON:01002935	prenylamine	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	prenylamine		
CHEBI:8768	clofezone	skos:exactMatch	DRON:01002942	clofezone	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	clofezone		
CHEBI:9144	Silymarin	skos:exactMatch	DRON:01002937	silymarin	semapv:LexicalMatching	oaklib	0.8497788951776651	rdfs:label	rdfs:label	silymarin		

@jamesaoverton
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I included very basic ChEBI match-and-replace functionality, but it's probably for exact (case-sensitive) matches.

hoganwr added a commit that referenced this issue Dec 24, 2024
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