Fungal -RiPPs- Like

[sawsanabed]

Hello all,
I am using the antiSMASH V.7 and in this version, there is a new group of RiPPs under the name (Fungal-RiPPs- like). the issue is when I run the big-scape it puts these BGCs into the " other" groups and it does not show it as a RiPPs on the HTML link. Is there any way to overcome this issue

Thanks a lot in advance

[jorgecnavarrom]

Hi
With the upcoming version 2 of BiG-SCAPE, we haven't updated the new detection types from antiSMASH 7. You could manually add this type (fungal-RiPP-like) to the list of RiPPs in the sort_bgc function of the functions.py file (currently here, at line 391, but line number might be different depending on the version you're using):

def sort_bgc(product):
    """Sort BGC by its type. Uses antiSMASH annotations
    (see 
    https://docs.antismash.secondarymetabolites.org/glossary/#cluster-types)
    """
  ...
    ripps_products = {'lantipeptide', 'thiopeptide', 'bacteriocin', 'linaridin', 
                     'cyanobactin', 'glycocin', 'LAP', 'lassopeptide', 
                     'sactipeptide', 'bottromycin', 'head_to_tail', 'microcin', 
                     'microviridin', 'proteusin', 'lanthipeptide', 'lipolanthine', 
                     'RaS-RiPP', 'fungal-RiPP', 'TfuA-related', 'guanidinotides', 
                     'RiPP-like', 'lanthipeptide-class-i', 'lanthipeptide-class-ii', 
                     'lanthipeptide-class-iii', 'lanthipeptide-class-iv',
                     'lanthipeptide-class-v', 'ranthipeptide', 'redox-cofactor',
                     'thioamitides', 'epipeptide', 'cyclic-lactone-autoinducer',
                     'spliceotide', 'RRE-containing', 'crocagin', 'fungal-RiPP-like'}
    saccharide_products = {'amglyccycl', 'oligosaccharide', 'cf_saccharide', 
                     'saccharide'}
...