v3seq is a quick pipeline that extracts reads overlapping V3 by aligning
them with blastx-fast to a set of V3 consensus sequences (taken from
this paper). Reads are then
oriented in the correct direction, an MSA is produced and a rough estimate
of haplotypes is returned by counting identical sequences over the V3 region.
-
Notifications
You must be signed in to change notification settings - Fork 0
medvir/v3seq
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
About
V3 loop from sequencing data
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published