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fplazaonate committed Oct 28, 2024
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## Introduction

CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data.\
CroCoDeEL is a tool that detects cross-sample contamination (aka well-to-well leakage) in shotgun metagenomic data.\
It accurately identifies contaminated samples but also pinpoints contamination sources and estimates contamination rates.\
CroCoDeEL relies only on species abundance tables and does not need negative controls.
CroCoDeEL relies only on species abundance tables and does not need negative controls nor sample position during processing (i.e. plate maps).

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<img src="docs/logos/logo.webp" width="350" height="350" alt="logo">
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