Add new merging

metagenopolis · Jun 21, 2024 · 815b52d · 815b52d
1 parent 920b04f
commit 815b52d
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diff --git a/conda_recipe/meta.yaml b/conda_recipe/meta.yaml
@@ -36,7 +36,11 @@ requirements:
         - bedtools >=2.18.0
 test:
     commands:
-        - meteor test
+        - meteor -h
+        - bowtie2 -h
+        - bedtools -h
+        - raxml-ng -h
+        - bcftools -h
     imports:
         - pysam
         - pandas

diff --git a/meteor/merging.py b/meteor/merging.py
@@ -316,7 +316,11 @@ def execute(self) -> None:
                     "modules_completeness": ["msp_name", "mod_id"],
                     "modules": ["mod_id"],
                     "mustard_as_genes_sum": ["annotation"],
+                    "mustard_as_msp_sum": ["annotation"],
+                    "dbcan_as_genes_sum": ["annotation"],
                     "dbcan_as_msp_sum": ["annotation"],
+                    "kegg_as_genes_sum": ["annotation"],
+                    "kegg_as_msp_sum": ["annotation"],
                 }
             )
         for my_pattern, value in list_pattern_to_merge.items():