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v4.0.6

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@mgymrek mgymrek released this 01 Jul 20:54
· 1 commit to master since this release
v4.0.6
47da4ca

Since 4.0.0:

  • Long-awaited fix handling the case when read group IDs are replicated across BAM files input to allelotype.
  • allelotype now recognizes either _.bai or _.bam.bai BAM index files.
  • Added option --dont-include-pl to allelotype, which creates VCFs with no PL field, greatly reducing their size.
  • Added option --gridk to allelotype, which controls how many possible alleles are considered when computing genotype likelihoods.
  • Added VCF fields PQ and DPA.
  • Bug fix for precision error leading to low quality scores for high coverage heterozygous sites.
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