set prefix #1
Workflow file for this run
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| name: Run the tests | ||
| on: [pull_request] | ||
| env: | ||
| PREFIX_LINUX: /usr/share/miniconda3/envs/bioptim | ||
| PREFIX_MACOS: /Users/runner/miniconda3/envs/bioptim | ||
| PREFIX_WINDOWS: C:\Miniconda3\envs\bioptim | ||
| jobs: | ||
| build: | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| - os: []ubuntu-latest, macos-latest, windows-latest] | ||
| - shard:[1, 2, 3, 4] | ||
| name: Tests on ${{ matrix.os }}-shard ${{ matrix.shard }} | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - name: Set prefix | ||
| run: | | ||
| if [[ "${{ runner.os }}" == "Linux" ]]; then | ||
| echo "PREFIX=${{ env.PREFIX_LINUX }}" >> $GITHUB_ENV | ||
| elif [[ "${{ runner.os }}" == "macOS" ]]; then | ||
| echo "PREFIX=${{ env.PREFIX_MACOS }}" >> $GITHUB_ENV | ||
| elif [[ "${{ runner.os }}" == "Windows" ]]; then | ||
| echo "PREFIX=${{ env.PREFIX_WINDOWS }}" >> $GITHUB_ENV | ||
| fi | ||
| - name: Checkout code | ||
| uses: actions/checkout@v3 | ||
| - name: Setup environment | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| miniforge-variant: Mambaforge | ||
| miniforge-version: latest | ||
| use-mamba: true | ||
| activate-environment: bioptim | ||
| environment-file: environment.yml | ||
| - name: Print mamba info | ||
| run: | | ||
| mamba config --show | ||
| mamba info | ||
| mamba list | ||
| - name: Install extra dependencies | ||
| run: mamba install pytest-cov black pytest pytest-cov codecov packaging -cconda-forge | ||
| - name: Install ACADOS on Linux | ||
| run: | | ||
| cd external | ||
| ./acados_install_linux.sh | ||
| cd .. | ||
| if: matrix.os == 'ubuntu-latest' | ||
| - name: Install ACADOS on Mac | ||
| run: | | ||
| cd external | ||
| ./acados_install_mac.sh | ||
| cd .. | ||
| if: matrix.os == 'macos-latest' | ||
| - name: Run tests | ||
| run: pytest -v --color=yes --cov-report term-missing --cov=bioptim tests/shard${{ matrix.shard }} | ||
| - name: Test installed version of bioptim | ||
| run: | | ||
| python setup.py install | ||
| cd | ||
| python -c "import bioptim" | ||
| #if: matrix.shard == 1 | ||
| - name: Generate coverage report | ||
| run: coverage report -m | ||
| - name: Archive coverage report | ||
| uses: actions/upload-artifact@v2 | ||
| with: | ||
| name: coverage${{ matrix.shard }} | ||
| path: .coverage.* | ||
| merge-coverage: | ||
| needs: build | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Download all workflow run artifacts | ||
| uses: actions/download-artifact@v2 | ||
| - name: Install extra dependencies | ||
| run: | | ||
| sudo apt-get install -y python3-pip | ||
| pip3 install coverage | ||
| - name: Merge coverage reports | ||
| run: coverage combine | ||
| - name: Generate XML report | ||
| run: coverage xml | ||
| - name: Upload coverage to Codecov | ||
| uses: codecov/codecov-action@v2 | ||
| with: | ||
| file: ./coverage.xml | ||
| flags: unittests | ||
| fail_ci_if_error: true | ||
