Python_for_lakes_microbiomes

Scripts adapted for the publication Bulygin et al., PMCID: PMC10494839.

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
Autoencoders.ipynb		Autoencoders.ipynb
Clustering-small.ipynb		Clustering-small.ipynb
Intrinsic_dim_estimation.ipynb		Intrinsic_dim_estimation.ipynb
Lake_Buffalo.csv		Lake_Buffalo.csv
Manifold_learning.ipynb		Manifold_learning.ipynb
MetaHIT_33SangerSamples_genus.txt		MetaHIT_33SangerSamples_genus.txt
MetaHIT_41SangerSamples_genus.txt		MetaHIT_41SangerSamples_genus.txt
Preprocessing.ipynb		Preprocessing.ipynb
README.md		README.md
Visualization_separate_Champ.ipynb		Visualization_separate_Champ.ipynb
Visualization_separate_Conest.ipynb		Visualization_separate_Conest.ipynb
Visualization_separate_PLSF.ipynb		Visualization_separate_PLSF.ipynb
Visualization_separate_StCh.ipynb		Visualization_separate_StCh.ipynb
Visualization_separate_buff.ipynb		Visualization_separate_buff.ipynb
Visualization_separate_rotor.ipynb		Visualization_separate_rotor.ipynb
best_weights		best_weights
clustering_utils.py		clustering_utils.py
environment.yml		environment.yml
intrinsic_dims_pca_strictdata_processed_small.npy		intrinsic_dims_pca_strictdata_processed_small.npy
utils.py		utils.py

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