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microbiome · Dec 21, 2024 · b7f1a75 · b7f1a75
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diff --git a/R/transformCounts.R b/R/transformCounts.R
@@ -115,9 +115,9 @@
 #' # The target of transformation can be specified with "assay.type"
 #' # Pseudocount can be added by specifying 'pseudocount'.
 #' 
-#' # Perform CLR with smallest positive value as pseudocount
+#' # Perform CLR with half of the smallest positive value as pseudocount
 #' tse <- transformAssay(
-#'     tse, assay.type = "relabundance", method = "clr", 
+#'     tse, assay.type = "counts", method = "clr", 
 #'     pseudocount = TRUE
 #'     )
 #'                       

diff --git a/man/transformAssay.Rd b/man/transformAssay.Rd