Merge branch 'develop'

.github/workflows/build.yaml

@@ -0,0 +1,82 @@
+name: "Build"
+
+on:
+  push:
+    tags: [ '*' ]
+    branches: [ '*' ]
+  schedule:
+    - cron: '10 1 * * *'
+
+  workflow_dispatch: { }
+
+jobs:
+  init:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: milaboratory/github-ci/actions/context/init@v2
+        with:
+          version-canonize: false
+      - id: context
+        uses: milaboratory/github-ci/actions/context@v2
+
+    outputs:
+      is-release: ${{ steps.context.outputs.is-release }}
+
+  run:
+    needs:
+      - init
+
+    uses: milaboratory/github-ci/.github/workflows/java-gradle-app.yaml@v2
+    with:
+      # Environment
+      java-version: '8'
+      app-name: MiXCR
+      app-name-slug: 'mixcr'
+
+      # Tests
+      test-unit: true
+      test-unit-before-tasks: shadowJar
+      test-unit-cache: true
+      test-unit-cache-paths: |
+        ./src/test/resources/sequences/big/**
+      test-unit-cache-key: 'tests-sequences-v1'
+
+      test-integration: true
+      test-integration-before-tasks: shadowJar
+      test-integration-tasks: ''
+      test-integration-cache: true
+      test-integration-cache-paths: |
+        ./src/test/resources/sequences/big/**
+      test-integration-cache-key: 'tests-sequences-v1'
+
+      # Distribution
+      dist-docker: false
+      dist-archive: ${{ github.event_name != 'schedule' }}
+      dist-archive-tasks: 'distributionZip'
+      dist-archive-paths: './distributions/*.zip'
+
+      # Release to S3
+      release-to-s3: ${{ github.event_name != 'schedule' }}
+      release-s3-add-version: true
+      release-s3-add-sha: ${{ fromJSON(needs.init.outputs.is-release) && 'false' || '8' }}
+
+      # Send notifications
+      notify-telegram: true
+
+    secrets:
+      env: |
+        { "MI_LICENSE": ${{ toJSON(secrets.MI_LICENSE) }} }
+
+      GRADLE_PROPERTIES: |
+        miRepoAccessKeyId=${{ secrets.AWS_CI_ACCESS_KEY_ID }}
+        miRepoSecretAccessKey= ${{ secrets.AWS_CI_SECRET_ACCESS_KEY }}
+
+        miGitHubMavenUser=${{ github.actor }}
+        miGitHubMavenToken=${{ secrets.GITHUB_TOKEN }}
+
+      AWS_KEY_ID: ${{ secrets.AWS_CI_ACCESS_KEY_ID }}
+      AWS_KEY_SECRET: ${{ secrets.AWS_CI_SECRET_ACCESS_KEY }}
+
+      TELEGRAM_NOTIFICATION_TARGET: ${{ secrets.TG_CHANNEL_MIBUILDS }}
+      TELEGRAM_API_TOKEN: ${{ secrets.TG_CI_BOT_TOKEN }}
+

.gitignore

@@ -9,3 +9,8 @@ out
 test_target
 src/test/resources/sequences/big
 tmp
+pack
+build
+.gradle
+mi.license
+.mi.license

.mi-ci/hooks/test-integration-after.sh

@@ -0,0 +1,10 @@
+#!/usr/bin/env bash
+
+script_dir=$(dirname "${0}")
+
+cd "${script_dir}/../.." || exit
+
+#export MI_LICENSE_DEBUG=MI_LICENSE_DEBUG
+
+# Run integration tests
+./itests.sh test

.mi-ci/hooks/test-integration-before.sh

@@ -0,0 +1,13 @@
+#!/usr/bin/env bash
+
+script_dir=$(dirname "${0}")
+
+cd "${script_dir}/../.." || exit
+
+#export MI_LICENSE_DEBUG=MI_LICENSE_DEBUG
+
+# Downloadable test data
+./ensure-test-data.sh
+
+# Builds pre-processed test data
+./prepare-test-data.sh

.mi-ci/hooks/test-unit-before.sh

@@ -0,0 +1,13 @@
+#!/usr/bin/env bash
+
+script_dir=$(dirname "${0}")
+
+cd "${script_dir}/../.." || exit
+
+#export MI_LICENSE_DEBUG=MI_LICENSE_DEBUG
+
+# Downloadable test data
+./ensure-test-data.sh
+
+# Builds pre-processed test data
+./prepare-test-data.sh