-
Notifications
You must be signed in to change notification settings - Fork 1
/
common.py
200 lines (124 loc) · 4.82 KB
/
common.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
#!/usr/bin/env python
import os
import subprocess
def KILL(log):
raise SystemExit('\n '+'\033[1m'+'@@@ '+'\033[91m'+'FATAL' +'\033[0m'+' -- '+log+'\n')
# --
def WARNING(log):
print '\n '+'\033[1m'+'@@@ '+'\033[93m'+'WARNING'+'\033[0m'+' -- '+log+'\n'
# --
def EXE(cmd, suspend=True, verbose=False, dry_run=False):
if verbose: print '\033[1m'+'>'+'\033[0m'+' '+cmd
if dry_run: return
_exitcode = os.system(cmd)
if _exitcode and suspend: raise SystemExit(_exitcode)
return _exitcode
# --
def get_output(cmd, permissive=False):
prc = subprocess.Popen(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
out, err = prc.communicate()
if (not permissive) and prc.returncode:
KILL('get_output -- shell command failed [return-code='+str(prc.returncode)+'] (execute command to reproduce the error):\n'+' '*14+'> '+cmd)
return (out, err)
# --
def command_output_lines(cmd, stdout=True, stderr=False):
_tmp_out_ls = []
if not (stdout or stderr):
WARNING('command_output_lines -- options "stdout" and "stderr" both set to FALSE, returning empty list')
return _tmp_out_ls
_tmp_out = get_output(cmd)
if stdout: _tmp_out_ls += _tmp_out[0].split('\n')
if stderr: _tmp_out_ls += _tmp_out[1].split('\n')
return _tmp_out_ls
# --
def rreplace(str__, old__, new__, occurrence__):
li_ = str__.rsplit(old__, occurrence__)
return new__.join(li_)
# --
def which(program, permissive=False, verbose=False):
def is_exe(fpath):
return os.path.isfile(fpath) and os.access(fpath, os.X_OK)
fpath, fname = os.path.split(program)
_exe_ls = []
if fpath:
if is_exe(program): _exe_ls += [program]
else:
for path in os.environ["PATH"].split(os.pathsep):
path = path.strip('"')
exe_file = os.path.join(path, program)
if is_exe(exe_file): _exe_ls += [exe_file]
_exe_ls = list(set(_exe_ls))
if len(_exe_ls) == 0:
log_msg = 'which -- executable not found: '+program
if permissive:
if verbose: WARNING(log_msg)
return None
else:
KILL(log_msg)
if len(_exe_ls) > 1:
if verbose: WARNING('which -- executable "'+program+'" has multiple matches: \n'+str(_exe_ls))
return _exe_ls[0]
# --
def is_int(value):
try: int(value)
except ValueError: return False
return True
# --
def is_float(value):
try: float(value)
except ValueError: return False
return True
# --
def colored_text(txt, keys=[]):
_tmp_out = ''
for _i_tmp in keys:
_tmp_out += '\033['+_i_tmp+'m'
_tmp_out += txt
if len(keys) > 0: _tmp_out += '\033[0m'
return _tmp_out
# --
def HTCondor_jobIDs(username=None):
if not username:
if 'USER' in os.environ: username = os.environ['USER']
if not username:
KILL('HTCondor_jobIDs -- unspecified argument "username"')
_condorq_jobIDs = []
_condorq_lines = get_output('condor_q')[0].split('\n')
for _i_condorq in _condorq_lines:
_i_condorq_pieces = _i_condorq.split()
if (len(_i_condorq_pieces) > 0) and (_i_condorq_pieces[0] == str(username)):
_condorq_jobIDs += [_i_condorq_pieces[-1]]
return _condorq_jobIDs
def HTCondor_jobExecutables(username=None):
if not username:
if 'USER' in os.environ: username = os.environ['USER']
if not username:
KILL('HTCondor_jobExecutables -- unspecified argument "username"')
_condorq_jobExes = []
_condorq_lines = get_output('condor_q -long '+username)[0].split('\n')
for _i_condorq in _condorq_lines:
if not _i_condorq.startswith('Cmd = '): continue
_i_condorq_cmd_pieces = _i_condorq.split(' = ')
if len(_i_condorq_cmd_pieces) != 2: continue
_exe_path = _i_condorq_cmd_pieces[1]
_exe_path = _exe_path.replace(' ', '')
if len(_exe_path) == 0: continue
if _exe_path.startswith('"'): _exe_path = _exe_path[+1:]
if _exe_path.endswith ('"'): _exe_path = _exe_path[:-1]
_exe_path = os.path.abspath(os.path.realpath(_exe_path))
_condorq_jobExes += [_exe_path]
_condorq_jobExes = sorted(list(set(_condorq_jobExes)))
return _condorq_jobExes
def HTCondor_executable_from_jobID(jobID):
_condorq_cmd = get_output('condor_q '+jobID+' -long')[0].split('\n')
_condorq_cmd = [_tmp for _tmp in _condorq_cmd if _tmp.startswith('Cmd = ')]
if len(_condorq_cmd) != 1: return None
_condorq_cmd_pieces = _condorq_cmd[0].split(' = ')
if len(_condorq_cmd_pieces) != 2: return None
_exe_path = _condorq_cmd_pieces[1]
_exe_path = _exe_path.replace(' ', '')
if _exe_path.startswith('"'): _exe_path = _exe_path[+1:]
if _exe_path.endswith ('"'): _exe_path = _exe_path[:-1]
_exe_path = os.path.abspath(os.path.realpath(_exe_path))
return _exe_path
# --