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environment.yml
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name: tf36_ifdeepre
channels:
- pytorch
- bioconda/label/cf201901
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- _tflow_select=2.1.0=gpu
- absl-py=0.13.0=py36h06a4308_0
- astor=0.8.1=py36h06a4308_0
- blas=1.0=mkl
- blast=2.5.0=hc0b0e79_3
- boost=1.73.0=py36h06a4308_11
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.17.1=h27cfd23_0
- ca-certificates=2021.10.8=ha878542_0
- certifi
- cpuonly=2.0=0
- cudatoolkit=10.0.130=0
- cudnn=7.6.5=cuda10.0_0
- cupti=10.0.130=0
- dataclasses=0.8=pyh4f3eec9_6
- ffmpeg=4.3=hf484d3e_0
- freetype=2.11.0=h70c0345_0
- gast=0.2.2=py36_0
- gmp=6.2.1=h2531618_2
- gnutls=3.6.15=he1e5248_0
- google-pasta=0.2.0=pyhd3eb1b0_0
- h5py=2.10.0=py36hd6299e0_1
- hdf5=1.10.6=hb1b8bf9_0
- icu=58.2=he6710b0_3
- importlib-metadata=4.8.1=py36h06a4308_0
- intel-openmp=2021.4.0=h06a4308_3561
- jpeg=9d=h7f8727e_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- libboost=1.73.0=h3ff78a5_11
- libedit=3.1=heed3624_0
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=9.3.0=h5101ec6_17
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libgomp=9.3.0=h5101ec6_17
- libiconv=1.15=h63c8f33_5
- libidn2=2.3.2=h7f8727e_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.17.2=h4ff587b_1
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.2.0=h85742a9_0
- libunistring=0.9.10=h27cfd23_0
- libuv=1.40.0=h7b6447c_0
- libwebp-base=1.2.2=h7f8727e_0
- lz4-c=1.9.3=h295c915_1
- markdown=3.3.4=py36h06a4308_0
- mkl=2020.2=256
- mkl-service=2.3.0=py36he8ac12f_0
- mkl_fft=1.3.0=py36h54f3939_0
- mkl_random=1.1.1=py36h0573a6f_0
- ncurses=6.0=h9df7e31_2
- nettle=3.7.3=hbbd107a_1
- numpy=1.19.2=py36h54aff64_0
- numpy-base=1.19.2=py36hfa32c7d_0
- olefile=0.46=py36_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=1.0.2u=h516909a_0
- opt_einsum=3.3.0=pyhd3eb1b0_1
- pip=21.2.2=py36h06a4308_0
- protobuf=3.17.2=py36h295c915_0
- py-boost=1.73.0=py36ha9443f7_11
- python=3.6.2=hca45abc_19
- pytorch=1.10.2=py3.6_cpu_0
- pytorch-mutex=1.0=cpu
- readline=7.0=ha6073c6_4
- six=1.16.0=pyhd3eb1b0_0
- sqlite=3.23.1=he433501_0
- tensorflow-gpu=2.0.0=h0d30ee6_0
- termcolor=1.1.0=py36h06a4308_1
- tk=8.6.11=h1ccaba5_0
- torchvision=0.11.3=py36_cpu
- typing_extensions=3.10.0.2=pyh06a4308_0
- werkzeug=0.16.1=py_0
- wheel=0.37.0=pyhd3eb1b0_1
- wrapt=1.12.1=py36h7b6447c_1
- xz=5.2.5=h7b6447c_0
- zipp=3.6.0=pyhd3eb1b0_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.9=haebb681_0
- pip:
- appdirs==1.4.4
- attrs==21.4.0
- cachetools==4.2.4
- charset-normalizer==2.0.8
- click==8.0.4
- fair-esm==0.4.0
- fasta-reader==1.0.0
- gff-io==0.0.2
- google-auth
- google-auth-oauthlib==0.4.6
- grpcio==1.42.0
- hmmer==0.1.0
- idna==3.3
- importlib-resources==5.4.0
- iniconfig==1.1.1
- isal==0.11.1
- joblib==1.1.0
- keras==2.2.0
- keras-applications==1.0.2
- keras-preprocessing==1.0.1
- more-itertools==8.12.0
- oauthlib==3.1.1
- packaging==21.3
- pandas==1.1.5
- pillow==8.4.0
- pluggy==1.0.0
- pooch==1.6.0
- py==1.11.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pyparsing==3.0.7
- pytest==7.0.1
- python-dateutil==2.8.2
- pytz==2022.1
- pyyaml==6.0
- requests==2.26.0
- requests-oauthlib==1.3.0
- rsa==4.8
- scikit-learn==0.24.2
- scipy==1.4.1
- setuptools
- sklearn==0.0
- tensorboard==1.9.0
- tensorflow==1.9.0
- tensorflow-estimator==2.1.0
- tflearn==0.3.2
- threadpoolctl==3.0.0
- tomli==1.2.3
- urllib3==1.26.7
- xopen==1.4.0
prefix: /data/tanqingxiong/anaconda3/envs/tf36_ifdeepre