klinfys-register

Experiment kring kvalitetsregierliknande tillämpningar för klinisk fysiologi. Under ytan baserat på hälsoinfomatikstandarder som t.ex. openEHR och Snomed CT

I testfasenbörjar vi sannolikt med nedanstående verktyg

Tools:

• CKM - List/browse archetypes (and template examples): https://ckm.openehr.org/ckm/
• Archetype Designer - Create/edit templates (and if needed also create archetypes):https://tools.openehr.org/designer/
  • When importing or creating archeypes and templates with this tool connected to this reposotiry the files will likely end up in /local
  • ...then export OPT (Operational template) to be used in the next step. Please also save some useful example OPTs in the /opt subdirectory
• Better Studio - Create GUI/forms and queries, e.g. using https://sandbox.better.care/studio/ Please also save some useful example forms (zip files) in the /forms subdirectory
• Snomed CT browser: https://browser.ihtsdotools.org/

Example setup and settings

Archetype designer

Make sure you are logged in to Archetype designer using GitHub first:

Better Studio (Sandbox)

• Make a (currently free) personal user registration at https://sandbox.better.care/studio/login (for info material see https://platform.better.care/sandbox)
• If not already logged in, log in to the tool https://sandbox.better.care/studio/ and select Administration (or go straight to https://sandbox.better.care/studio/administration/domain-list)

• Set up a project (you can have several) in our case let's use the shared SFMI tutorial/course account at EHRscape as backend (Only fake patient data allowed - no clinical use!)
  • Project name: whatever you like to call it
  • EHR Server URL: https://rest.ehrscape.com/
  • EHR Server username: sfmi (not capital SFMI as in the somewhat faulty screenshot below)
  • EHR Server password: the password used in the course - see invitation email or ask colleague

Test patients available in EHRScape's SFMI domain

To list (fake) test patients and some demographic basic facts the following query can be run in https://sandbox.better.care/studio/aql-builder

SELECT e/ehr_id/value AS ehr_id,
       e/ehr_status/Subject/external_ref/id/value AS patient_id,
       e/ehr_status/other_details/items[at0001]/value/value as sex,
       e/ehr_status/other_details/items[at0002]/value/value as date_of_birth
FROM EHR e
ORDER BY date_of_birth DESCENDING

An example result file (.csv) is provided in this directory.