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Build, test, and deploy, wheels

Explicit tests of fixation pruning #1166

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Explicit tests of fixation pruning

Explicit tests of fixation pruning #1166

Workflow file for this run

.github/workflows/wheels.yml at 6f1d998
name: Build, test, and deploy, wheels
on:
schedule:
- cron: "0 0 1 * *"
release:
types: [created]
pull_request:
branches: [main, dev]
jobs:
build_sdist:
name: Build source distribution
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ secrets.GITHUB_TOKEN }}
- name: Checkout
uses: actions/checkout@v4
with:
submodules: true
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Build sdist
shell: bash
run: |
python -m pip install --upgrade pip build
python -m build -s .
- name: Upload sdist
uses: actions/upload-artifact@v4
with:
name: sdist
path: dist
macos-wheels:
name: Build and test macOS wheels
runs-on: ${{ matrix.os }}
strategy:
matrix:
rust: [1.62.1]
os: [macos-14, macos-13]
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ secrets.GITHUB_TOKEN }}
- name: Checkout
uses: actions/checkout@v4
with:
submodules: true
fetch-depth: 0
- name: Install cbindgen
uses: baptiste0928/cargo-install@v3
with:
crate: cbindgen
version: "=0.24.3"
locked: true
cache-key: ${{ matrix.os }}
- name: Build wheels
uses: pypa/cibuildwheel@v2.19.1
- name: Upload Wheels
uses: actions/upload-artifact@v4
with:
name: ${{ matrix.os }}-wheels
path: wheelhouse
manylinux2_28:
name: Build and test Linux wheels
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ secrets.GITHUB_TOKEN }}
- name: Checkout
uses: actions/checkout@v4
with:
submodules: true
fetch-depth: 0
- name: Build wheels
uses: pypa/cibuildwheel@v2.19.1
- name: Upload Wheels
uses: actions/upload-artifact@v4
with:
name: linux-wheels
path: wheelhouse
manylinux2_28_test:
name: Build package from source dist
runs-on: ubuntu-latest
needs: ['build_sdist']
strategy:
matrix:
python: [3.9, "3.10", "3.11", "3.12"]
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ secrets.GITHUB_TOKEN }}
- name: Checkout
uses: actions/checkout@v4
- name: Download sdist
uses: actions/download-artifact@v4.1.7
with:
name: sdist
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: Install sdist into venv
run: |
python -m venv sdist_venv
source sdist_venv/bin/activate
python -m pip install --upgrade pip setuptools
python -m pip install *.gz
# The cd is to move us away from
# the project repo root where the module is not built
cd sdist_venv
python -c "import fwdpy11;print(fwdpy11.__version__)"
deactivate
rm -rf sdist_venv
# Test that wheels build in the docker cibuildwheel workflow
# can be installed on Ubuntu Linux, which is a different distro.
manylinux2_28_test_install_wheel:
name: Install the wheel on github runner
runs-on: ubuntu-latest
needs: ['manylinux2_28']
strategy:
matrix:
python: [3.8, 3.9, "3.10", "3.11", "3.12"]
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ secrets.GITHUB_TOKEN }}
- name: Download sdist
uses: actions/download-artifact@v4.1.7
with:
name: linux-wheels
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: install into venv
run: |
python -m venv venv
source venv/bin/activate
python -m pip install --no-cache-dir --only-binary=fwdpy11 --pre --find-links . fwdpy11
python -m fwdpy11 --includes
python -c "import fwdpy11;print(fwdpy11.__version__)"
python -c "import fwdpy11;print(fwdpy11.__file__)"
macos_test_install_wheel:
name: Install the wheel on github runner
runs-on: ${{ matrix.os }}
needs: ['macos-wheels']
strategy:
matrix:
python: ["3.11", "3.12"]
os: [macos-14, macos-13]
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ secrets.GITHUB_TOKEN }}
- name: Download sdist
uses: actions/download-artifact@v4.1.7
with:
name: ${{ matrix.os }}-wheels
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python }}
- name: install into venv
run: |
python -m venv venv
source venv/bin/activate
python -m pip install --no-cache-dir --only-binary=fwdpy11 --pre --find-links . fwdpy11
python -m fwdpy11 --includes
python -c "import fwdpy11;print(fwdpy11.__version__)"
python -c "import fwdpy11;print(fwdpy11.__file__)"
upload_to_PyPI:
name: Upload to PyPI
runs-on: ubuntu-latest
needs: ['manylinux2_28', 'manylinux2_28_test', 'manylinux2_28_test_install_wheel', 'macos_test_install_wheel']
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.12.1
with:
access_token: ${{ secrets.GITHUB_TOKEN }}
- name: Download all
uses: actions/download-artifact@v4.1.7
- name: Move to dist
run: |
mkdir dist
cp */*.{whl,gz} dist/.
- name: Publish distribution to PRODUCTION PyPI
if: github.event_name == 'release'
uses: pypa/gh-action-pypi-publish@release/v1
with:
password: ${{ secrets.PYPI_UPLOAD }}