Add more tests of fixation pruning #2613
Workflow file for this run
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| name: Build and deploy manual | |
| on: | |
| pull_request: | |
| branches: [main, dev] | |
| release: | |
| types: [created] | |
| jobs: | |
| builddocs: | |
| name: Build manual | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| compiler: [gcc] | |
| python-version: ["3.12"] | |
| rust: [1.62.1] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/cancel-workflow-action@0.12.1 | |
| with: | |
| access_token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| fetch-depth: 0 | |
| - name: Set up rust | |
| uses: dtolnay/rust-toolchain@v1 | |
| with: | |
| toolchain: ${{ matrix.rust }} | |
| - name: Install cbindgen | |
| uses: baptiste0928/cargo-install@v3 | |
| with: | |
| crate: cbindgen | |
| version: "=0.24.3" | |
| # We install the R dependencies first | |
| # Later, Python dependencies will go into the same place. | |
| # Python will silently update dependencies if needed, | |
| # and they'll get cached, too. | |
| - name: Cache dependancies | |
| id: cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.local | |
| key: ${{ matrix.python }}-${{ hashFiles('doc/development.txt') }}-V0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install apt dependencies | |
| run: | | |
| sudo apt install --fix-missing -y libgsl-dev cmake | |
| - name: Set GCC as compiler | |
| if: matrix.compiler == 'gcc' | |
| run: | | |
| echo "CC=gcc-9" >> $GITHUB_ENV | |
| echo "CXX=g++-9" >> $GITHUB_ENV | |
| - name: Test compiler | |
| if: matrix.compiler == 'gcc' | |
| run: | | |
| $CXX -v | |
| $CC -v | |
| - name: Edit PATH | |
| run: | | |
| echo "$HOME/.local/bin" >> $GITHUB_PATH | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install --user --upgrade pip | |
| # These are needed to install black: | |
| python -m pip install --user --upgrade setuptools wheel | |
| python -m pip install --user --upgrade -r requirements/development.txt | |
| - name: rustc version | |
| run: | | |
| rustc --version | |
| - name: cbindgen version | |
| run: | | |
| cbindgen --version | |
| - name: Build module | |
| run: | | |
| python -m pip install -e . | |
| - name: Build the docs | |
| working-directory: doc | |
| run: | | |
| make | |
| - name: Move built HTML docs | |
| if: github.event_name == 'release' | |
| working-directory: doc | |
| run: | | |
| mv _build/html ../docs_output | |
| - name: Upload artifacts | |
| if: github.event_name == 'release' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docs_output | |
| path: docs_output/ | |
| deploy: | |
| name: deploy | |
| needs: builddocs | |
| if: github.event_name == 'release' | |
| runs-on: ubuntu-20.04 | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Download artifact | |
| uses: actions/download-artifact@v4.1.7 | |
| with: | |
| # Artifact name | |
| name: docs_output # optional | |
| # Destination path | |
| path: docs_output # optional | |
| - name: Deploy to GitHub Pages | |
| uses: Cecilapp/GitHub-Pages-deploy@v3 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.ACTIONS }} | |
| with: | |
| build_dir: docs_output/ |