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bump demes-forward-capi dependency
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@molpopgen
molpopgen committed Sep 27, 2023
1 parent 25f5156 commit ab045a6
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Showing 3 changed files with 8 additions and 65 deletions.
2 changes: 1 addition & 1 deletion fwdpy11/headers/fwdpp
Submodule fwdpp updated 98 files
+22 −6 .github/workflows/tests.yml
+1 −0 configure.ac
+0 −1 examples/K_linked_regions_extensions.cc
+4 −4 examples/confirm_mutation_counts.hpp
+4 −0 examples/diploid_fixed_sh_ind.cc
+4 −0 examples/diploid_ind.cc
+36 −29 examples/edge_buffering.cc
+1 −1 examples/evolve_generation_ts.hpp
+31 −40 examples/juvenile_migration.cc
+2 −2 examples/load_table_collection.cc
+19 −12 examples/simplify_tables.hpp
+60 −55 examples/tree_sequence_examples_common.cc
+15 −15 examples/tree_sequence_examples_common.hpp
+4 −2 examples/tree_sequence_examples_types.hpp
+2 −2 examples/wfevolvets.cc
+37 −23 examples/wfts_integration_test.cc
+2 −2 fwdpp/GSLrng_t.hpp
+6 −2 fwdpp/algorithm/compact_mutations.hpp
+4 −3 fwdpp/extensions/callbacks.hpp
+2 −2 fwdpp/fundamental_types/haploid_genome.hpp
+3 −3 fwdpp/internal/data_matrix_details.hpp
+3 −3 fwdpp/mutate_recombine.hpp
+4 −4 fwdpp/poptypes/diploid_population.hpp
+8 −8 fwdpp/poptypes/popbase.hpp
+2 −2 fwdpp/sugar/add_mutation.hpp
+1 −1 fwdpp/sugar/change_neutral.hpp
+2 −1 fwdpp/ts/Makefile.am
+4 −2 fwdpp/ts/definitions.hpp
+33 −26 fwdpp/ts/detail/advance_marginal_tree_policies.hpp
+17 −27 fwdpp/ts/detail/generate_data_matrix_details.hpp
+4 −27 fwdpp/ts/edge.hpp
+11 −7 fwdpp/ts/get_parent_ids.hpp
+4 −3 fwdpp/ts/make_simplifier_state.hpp
+108 −106 fwdpp/ts/marginal_tree.hpp
+45 −43 fwdpp/ts/marginal_tree_functions/children.hpp
+4 −5 fwdpp/ts/marginal_tree_functions/node_traversal_order.hpp
+18 −17 fwdpp/ts/marginal_tree_functions/node_traversal_preorder.hpp
+55 −54 fwdpp/ts/marginal_tree_functions/nodes.hpp
+24 −21 fwdpp/ts/marginal_tree_functions/roots.hpp
+32 −30 fwdpp/ts/marginal_tree_functions/samples.hpp
+12 −12 fwdpp/ts/marginal_tree_functions/statistics.hpp
+9 −5 fwdpp/ts/mark_multiple_roots.hpp
+11 −0 fwdpp/ts/mutate_tables.hpp
+3 −29 fwdpp/ts/mutation_record.hpp
+3 −18 fwdpp/ts/node.hpp
+17 −0 fwdpp/ts/node_flags.hpp
+36 −25 fwdpp/ts/recording/diploid_offspring.hpp
+69 −49 fwdpp/ts/recording/edge_buffer.hpp
+5 −2 fwdpp/ts/recording/mutations.hpp
+90 −54 fwdpp/ts/serialization.hpp
+174 −99 fwdpp/ts/simplification/simplification.hpp
+62 −57 fwdpp/ts/simplify_tables.hpp
+13 −13 fwdpp/ts/simplify_tables_output.hpp
+2 −22 fwdpp/ts/site.hpp
+4 −3 fwdpp/ts/site_visitor.hpp
+8 −3 fwdpp/ts/std_table_collection.hpp
+5 −215 fwdpp/ts/table_collection.hpp
+56 −6 fwdpp/ts/table_collection_functions.hpp
+7 −5 fwdpp/ts/table_simplifier.hpp
+43 −44 fwdpp/ts/tree_visitor.hpp
+8 −0 fwdpp/ts/types/Makefile.am
+54 −0 fwdpp/ts/types/edge.hpp
+23 −0 fwdpp/ts/types/generate_null_id.hpp
+55 −0 fwdpp/ts/types/mutation_record.hpp
+50 −0 fwdpp/ts/types/node.hpp
+34 −0 fwdpp/ts/types/site.hpp
+261 −0 fwdpp/ts/types/table_collection.hpp
+4 −2 fwdpp/types/nested_forward_lists.hpp
+6 −6 fwdpp/util/named_type.hpp
+1 −0 testsuite/Makefile.am
+11 −31 testsuite/fixtures/fwdpp_fixtures.hpp
+1 −1 testsuite/fixtures/sugar_fixtures.hpp
+6 −4 testsuite/tree_sequences/empty_table_collection.hpp
+21 −16 testsuite/tree_sequences/independent_implementations.cc
+13 −10 testsuite/tree_sequences/independent_implementations.hpp
+13 −18 testsuite/tree_sequences/preorder_adl.hpp
+17 −16 testsuite/tree_sequences/simple_table_collection.hpp
+18 −17 testsuite/tree_sequences/simple_table_collection_polytomy.hpp
+5 −3 testsuite/tree_sequences/test_ancestry_list.cc
+3 −3 testsuite/tree_sequences/test_diploid_recording.cc
+17 −4 testsuite/tree_sequences/test_edge_buffering_std_table_collection.cc
+15 −7 testsuite/tree_sequences/test_marginal_tree.cc
+1 −1 testsuite/tree_sequences/test_node_children_traversal.cc
+23 −19 testsuite/tree_sequences/test_preorder_node_traversal.cc
+1 −1 testsuite/tree_sequences/test_root_traversal.cc
+24 −19 testsuite/tree_sequences/test_sample_traversal.cc
+1 −1 testsuite/tree_sequences/test_site_visitor.cc
+5 −5 testsuite/tree_sequences/test_table_collection.cc
+29 −17 testsuite/tree_sequences/test_tree_visitor.cc
+12 −11 testsuite/tree_sequences/test_visit_sites.cc
+1 −1 testsuite/tree_sequences/tskit_utils.cc
+2 −2 testsuite/tree_sequences/tskit_utils.hpp
+59 −21 testsuite/tree_sequences/wfevolve_table_collection.hpp
+4 −2 testsuite/tree_sequences/wfevolve_table_collection_fxns.cc
+0 −7 testsuite/unit/gameteTest.cc
+5 −6 testsuite/unit/sugar_popgenmut.cc
+7 −4 testsuite/unit/test_mutate_recombine.cc
+16 −0 testsuite/unit/test_named_type.cc
69 changes: 6 additions & 63 deletions rust/fp11rust/Cargo.lock
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2 changes: 1 addition & 1 deletion tests/demes-spec
Submodule demes-spec updated 11 files
+5 −5 .github/workflows/docs.yml
+0 −2 docs/_toc.yml
+0 −27 docs/specification.md
+5 −6 docs/tutorial.md
+4 −6 requirements.txt
+0 −0 test-cases/valid/bad_migration_rates_sum_01.yaml
+0 −0 test-cases/valid/bad_migration_rates_sum_02.yaml
+10 −0 test-cases/valid/bad_pulse_time_01.yaml
+1 −1 test-cases/valid/deme_end_time_01.yaml
+1 −1 test-cases/valid/successors_predecessors_01.yaml
+1 −1 test-cases/valid/toplevel_defaults_deme_01.yaml

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