remove use of attr repr_ns

molpopgen · Aug 3, 2024 · f9830d6 · f9830d6
1 parent ce9776c
commit f9830d6
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Showing 9 changed files with 34 additions and 35 deletions.
diff --git a/fwdpy11/_types/demographic_model_citation.py b/fwdpy11/_types/demographic_model_citation.py
@@ -12,7 +12,7 @@
 @attr_add_asblack
 @attr_class_pickle
 @attr_class_to_from_dict
-@attr.s(kw_only=True, frozen=True, auto_attribs=True, repr_ns="fwdpy11")
+@attr.s(kw_only=True, frozen=True, auto_attribs=True)
 @deprecated(reason="prefer ForwardDemesGraph")
 class DemographicModelCitation(object):
     """

diff --git a/fwdpy11/_types/demographic_model_details.py b/fwdpy11/_types/demographic_model_details.py
@@ -17,7 +17,7 @@
 @attr_add_asblack
 @attr_class_pickle
 @attr_class_to_from_dict_no_recurse
-@attr.s(kw_only=True, frozen=True, auto_attribs=True, repr_ns="fwdpy11")
+@attr.s(kw_only=True, frozen=True, auto_attribs=True)
 @deprecated(reason="prefer ForwardDemesGraph")
 class DemographicModelDetails(object):
     """

diff --git a/fwdpy11/_types/forward_demes_graph.py b/fwdpy11/_types/forward_demes_graph.py
@@ -33,7 +33,6 @@ class ForwardTimeInterval:
     end_time: int
 
 
-@attr.s(repr_ns="fwdpy11")
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
 class ForwardDemesGraph(fwdpy11._fwdpy11._ForwardDemesGraph):

diff --git a/fwdpy11/_types/model_params.py b/fwdpy11/_types/model_params.py
@@ -36,7 +36,7 @@
 
 @attr_add_asblack
 @attr_class_to_from_dict_no_recurse
-@attr.s(kw_only=True, frozen=True, slots=True, repr_ns="fwdpy11")
+@attr.s(kw_only=True, frozen=True, slots=True)
 class MutationAndRecombinationRates(object):
     """
     Stores and validates the mutation and recombination rate parameters
@@ -114,7 +114,7 @@ def validate_timings(
 
 @attr_add_asblack
 @attr_class_to_from_dict_no_recurse
-@attr.s(kw_only=True, frozen=True, slots=True, repr_ns="fwdpy11")
+@attr.s(kw_only=True, frozen=True, slots=True)
 class ModelParams(object):
     """
     This class stores and validates the parameters of a simulation.

diff --git a/fwdpy11/_types/new_mutation_data.py b/fwdpy11/_types/new_mutation_data.py
@@ -5,7 +5,7 @@
 from .._fwdpy11 import ll_NewMutationData
 
 
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11", kw_only=True)
+@attr.s(auto_attribs=True, frozen=True, kw_only=True)
 class NewMutationData(ll_NewMutationData):
     """
     Data object for :func:`fwdpy11.DiploidPopulation.add_mutation`

diff --git a/fwdpy11/genetic_map_unit.py b/fwdpy11/genetic_map_unit.py
@@ -38,7 +38,7 @@ def _is_integer_if_discrete(self, attribute, value):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class PoissonInterval(fwdpy11._fwdpy11._ll_PoissonInterval):
     """
     Generate poisson number of crossover breakpoints.
@@ -93,7 +93,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class PoissonPoint(fwdpy11._fwdpy11._ll_PoissonPoint):
     """
     Generate a recombination breakpoint at a fixed position if the
@@ -152,7 +152,7 @@ def __setstate__(self, d):
 
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class BinomialInterval(fwdpy11._fwdpy11._ll_BinomialInterval):
     """
     Generate exactly one crossover with a given probability
@@ -206,7 +206,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class BinomialPoint(fwdpy11._fwdpy11._ll_BinomialPoint):
     """
     Generate a crossover breakpoint at a fixed position with a
@@ -260,7 +260,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class FixedCrossovers(fwdpy11._fwdpy11._ll_FixedCrossovers):
     """
     Generate a fixed number of crossover breakpoints.
@@ -318,7 +318,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class BinomialIntervalMap(fwdpy11._fwdpy11._ll_BinomialIntervalMap):
     """
     Generate exactly one crossover with a given probability

diff --git a/fwdpy11/genetic_values.py b/fwdpy11/genetic_values.py
@@ -59,7 +59,7 @@ class TimingError(Exception):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class Optimum(_ll_Optimum):
     """
     Parameters for a trait optimum.
@@ -99,7 +99,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11", eq=False)
+@attr.s(auto_attribs=True, frozen=True, eq=False)
 class PleiotropicOptima(_ll_PleiotropicOptima):
     """
     Parameters for multiple trait optima
@@ -145,7 +145,7 @@ def __eq__(self, other):
         return optima_equal and VS_equal and when_equal
 
 
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class GaussianStabilizingSelection(_ll_GaussianStabilizingSelection):
     """
     Define a mapping of phenotype-to-fitness according to a
@@ -228,7 +228,7 @@ def validate_timings(self, deme: int, demography: ForwardDemesGraph) -> None:
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class NoNoise(_ll_NoNoise):
     """
     No random effects on genetic values
@@ -246,7 +246,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class GaussianNoise(_ll_GaussianNoise):
     """
     Gaussian noise added to genetic values.
@@ -275,7 +275,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class Additive(_ll_Additive):
     """
     Additive effects on genetic values.
@@ -327,7 +327,7 @@ def validate_timings(self, deme: int, demography: ForwardDemesGraph) -> None:
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class Multiplicative(_ll_Multiplicative):
     """
     Multiplicative effects on genetic values.
@@ -379,7 +379,7 @@ def validate_timings(self, deme: int, demography: ForwardDemesGraph) -> None:
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class GBR(_ll_GBR):
     """
     The "gene-based recessive" trait model described in Thornton et al.
@@ -420,7 +420,7 @@ def validate_timings(self, deme: int, demography: ForwardDemesGraph) -> None:
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class AdditivePleiotropy(_ll_StrictAdditiveMultivariateEffects):
     """
     Multivariate trait values under strictly additive effects.

diff --git a/fwdpy11/mutation_dominance.py b/fwdpy11/mutation_dominance.py
@@ -31,7 +31,7 @@
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class FixedDominance(fwdpy11._fwdpy11.MutationDominance):
     """
     Fixed heterozygous effects.
@@ -51,7 +51,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class ExponentialDominance(fwdpy11._fwdpy11.MutationDominance):
     """
     Exponential distribution of heterozygous effects.
@@ -73,7 +73,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class UniformDominance(fwdpy11._fwdpy11.MutationDominance):
     """
     Uniform distribution of heterozygous effects.
@@ -98,7 +98,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True)
 class LargeEffectExponentiallyRecessive(fwdpy11._fwdpy11.MutationDominance):
     """
     Large effect mutations are more recessive according to

diff --git a/fwdpy11/regions.py b/fwdpy11/regions.py
@@ -37,7 +37,7 @@
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict
-@attr.s(auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True, repr=False)
 class Region(fwdpy11._fwdpy11._ll_Region):
     """
     A genomic region, defined by half-open interval [beg, end)
@@ -88,7 +88,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True, repr=False)
 class ConstantS(fwdpy11._fwdpy11._ll_ConstantS):
     """
     Mutations with fixed effect sizes
@@ -149,7 +149,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True, repr=False)
 class ExpS(fwdpy11._fwdpy11._ll_ExpS):
     """
     Exponential distribution of effect sizes
@@ -212,7 +212,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True, repr=False)
 class GammaS(fwdpy11._fwdpy11._ll_GammaS):
     """
     Gamma distribution of effect sizes
@@ -277,7 +277,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True, repr=False)
 class GaussianS(fwdpy11._fwdpy11._ll_GaussianS):
     """
     Gaussian distribution of effect sizes
@@ -338,7 +338,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True, repr=False)
 class LogNormalS(fwdpy11._fwdpy11._ll_LogNormalS):
     """
     Log-normal distribution of effect sizes.
@@ -449,7 +449,7 @@ def mv(
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(auto_attribs=True, frozen=True, repr=False)
 class UniformS(fwdpy11._fwdpy11._ll_UniformS):
     """
     Uniform distrubution of effect sizes
@@ -514,7 +514,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(eq=False, auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(eq=False, auto_attribs=True, frozen=True, repr=False)
 class MultivariateGaussianEffects(fwdpy11._fwdpy11._ll_MultivariateGaussianEffects):
     """
     Pleiotropic effects via a multivariate Gaussian distribution.
@@ -606,7 +606,7 @@ def __eq__(self, other):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(eq=False, auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(eq=False, auto_attribs=True, frozen=True, repr=False)
 class mvDES(fwdpy11._fwdpy11._ll_mvDES):
     """
     General multivariate distribution of effect sizes.
@@ -642,7 +642,7 @@ def __attrs_post_init__(self):
 @attr_add_asblack
 @attr_class_pickle_with_super
 @attr_class_to_from_dict_no_recurse
-@attr.s(eq=False, auto_attribs=True, frozen=True, repr=False, repr_ns="fwdpy11")
+@attr.s(eq=False, auto_attribs=True, frozen=True, repr=False)
 class DiscreteDESD(fwdpy11._fwdpy11._ll_DiscreteDESD):
     """
     Discretized distribution of effect sizes and dominance.