Preparing v0.1.2 release

CHANGELOG.md

@@ -1,5 +1,9 @@
 # Change Log
 
+## 0.1.2
+
+- Removed 'provided_by' and 'members' properties from TRAPI response message Knowledge Graph nodes
+
 ## 0.1.1
 
 - use NodeNormalizer to add name and category to SemSimian Server similarity match nodes

DEVELOPER_README.md

@@ -24,12 +24,12 @@ Steps to properly issue a new project release:
 
 1. Run the unit test suite to ensure that nothing fails. Iterate to fix failures (in the code or in terms of revised unit tests to reflect fresh code designs)
 2. Document release changes in the **CHANGELOG.md**
-3. Update the **`[Tool Poetry]version =`** field in the **pyprojects.yaml**, e.g. "0.1.1"
+3. Update the **`[Tool Poetry]version =`** field in the **pyprojects.yaml**, e.g. "0.1.2"
 4. Run **`poetry update`** (preferably, within a **`poetry shell`**)
 5. The project pip **requirements.txt** file snapshot of dependencies should also be updated at this point (type **`$ poetry export --output requirements.txt`**, assuming that the [proper poetry export plugin is installed](https://python-poetry.org/docs/pre-commit-hooks#poetry-export)). This may facilitate module deployment within environments that prefer to use pip rather than poetry to manage their deployments.
 6. Commit or pull request merge all files (including the **poetry.lock** file) to the local **main** branch.
-7. Add the equivalent Git **tag** to **main**. This should be the Semantic Version string from step 4 with an added 'v' prefix, e.g. "v0.1.1".
+7. Add the equivalent Git **tag** to **main**. This should be the Semantic Version string from step 4 with an added 'v' prefix, e.g. "v0.1.2".
 8. Push **main** to remote.
 9. Check if Git Actions for testing and documentation complete successfully.
-10. Create a Git package release using the same release tag, e.g. "v0.1.1".
-11. Check if Git Actions for package deployment is successful and check if the new version (e.g. "v0.1.1") is now visible on **[pypy.org](https://pypi.org/search/?q=OneHopTests)**
+10. Create a Git package release using the same release tag, e.g. "v0.1.2".
+11. Check if Git Actions for package deployment is successful and check if the new version (e.g. "v0.1.2") is now visible on **[pypy.org](https://pypi.org/search/?q=OneHopTests)**

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "monarch-trapi-kp"
-version = "0.1.1"
+version = "0.1.2"
 description = "Translator (Knowledge Provider) Reasoner API wrapper for the Semantic Similarity algorithm against the knowledge graph of the Monarch Initiative information system"
 authors = [
     "Richard Bruskiewich <richard.bruskiewich@delphinai.com>",

requirements.txt

@@ -680,9 +680,9 @@ parso==0.8.4 ; python_version >= "3.9" and python_version < "3.12" \
 pexpect==4.9.0 ; python_version >= "3.9" and python_version < "3.12" and sys_platform != "win32" \
     --hash=sha256:7236d1e080e4936be2dc3e326cec0af72acf9212a7e1d060210e70a47e253523 \
     --hash=sha256:ee7d41123f3c9911050ea2c2dac107568dc43b2d3b0c7557a33212c398ead30f
-platformdirs==4.2.2 ; python_version >= "3.9" and python_version < "3.12" \
-    --hash=sha256:2d7a1657e36a80ea911db832a8a6ece5ee53d8de21edd5cc5879af6530b1bfee \
-    --hash=sha256:38b7b51f512eed9e84a22788b4bce1de17c0adb134d6becb09836e37d8654cd3
+platformdirs==4.3.2 ; python_version >= "3.9" and python_version < "3.12" \
+    --hash=sha256:9e5e27a08aa095dd127b9f2e764d74254f482fef22b0970773bfba79d091ab8c \
+    --hash=sha256:eb1c8582560b34ed4ba105009a4badf7f6f85768b30126f351328507b2beb617
 pluggy==1.5.0 ; python_version >= "3.9" and python_version < "3.12" \
     --hash=sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1 \
     --hash=sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669
@@ -801,9 +801,9 @@ pytest-httpx==0.30.0 ; python_version >= "3.9" and python_version < "3.12" \
     --hash=sha256:755b8edca87c974dd4f3605c374fda11db84631de3d163b99c0df5807023a19a
 pytest-logging==2015.11.4 ; python_version >= "3.9" and python_version < "3.12" \
     --hash=sha256:cec5c85ecf18aab7b2ead5498a31b9f758680ef5a902b9054ab3f2bdbb77c896
-pytest==8.3.2 ; python_version >= "3.9" and python_version < "3.12" \
-    --hash=sha256:4ba08f9ae7dcf84ded419494d229b48d0903ea6407b030eaec46df5e6a73bba5 \
-    --hash=sha256:c132345d12ce551242c87269de812483f5bcc87cdbb4722e48487ba194f9fdce
+pytest==8.3.3 ; python_version >= "3.9" and python_version < "3.12" \
+    --hash=sha256:70b98107bd648308a7952b06e6ca9a50bc660be218d53c257cc1fc94fda10181 \
+    --hash=sha256:a6853c7375b2663155079443d2e45de913a911a11d669df02a50814944db57b2
 python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_version < "3.12" \
     --hash=sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3 \
     --hash=sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427
@@ -1184,9 +1184,9 @@ typing-extensions==4.12.2 ; python_version >= "3.9" and python_version < "3.12"
 uri-template==1.3.0 ; python_version >= "3.9" and python_version < "3.12" \
     --hash=sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7 \
     --hash=sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363
-urllib3==2.2.2 ; python_version >= "3.9" and python_version < "3.12" \
-    --hash=sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472 \
-    --hash=sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168
+urllib3==2.2.3 ; python_version >= "3.9" and python_version < "3.12" \
+    --hash=sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac \
+    --hash=sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9
 uvicorn==0.25.0 ; python_version >= "3.9" and python_version < "3.12" \
     --hash=sha256:6dddbad1d7ee0f5140aba5ec138ddc9612c5109399903828b4874c9937f009c2 \
     --hash=sha256:ce107f5d9bd02b4636001a77a4e74aab5e1e2b146868ebbad565237145af444c

tests/test_monarch_adapter.py

@@ -84,7 +84,7 @@ def test_missing_end_tag_path():
 TEST_MCQ_DUPLICATING_SET_INTERPRETATION: Dict = get_example("mmcq-trapi-query_with_duplicated_set_interpretation")
 
 
-@pytest.mark.skip(reason="Test failing due to Monarch SemSimian server issue... being investigated")
+# @pytest.mark.skip(reason="Test failing due to Monarch SemSimian server issue... being investigated")
 @pytest.mark.asyncio
 async def test_semsim_search():
     monarch_interface: MonarchInterface = get_monarch_interface()
@@ -128,7 +128,7 @@ async def test_semsim_search():
     )
 
 
-@pytest.mark.skip(reason="Test failing due to Monarch SemSimian server issue... being investigated")
+# @pytest.mark.skip(reason="Test failing due to Monarch SemSimian server issue... being investigated")
 @pytest.mark.asyncio
 async def test_run_query():
     monarch_interface: MonarchInterface = get_monarch_interface()