Skip to content

Issues: monarch-initiative/pheval

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

27 Open 183 Closed
27 Open 183 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Map to MONDO in disease benchmarking
#367 opened Nov 5, 2024 by yaseminbridges
@yaseminbridges
Account for compound het variants
#363 opened Oct 7, 2024 by yaseminbridges
1
@yaseminbridges
generatemakefile.sh j2 dependency
#362 opened Sep 27, 2024 by AO33
@souzadevinicius
1
Versioning plan of the corpora
#350 opened Aug 21, 2024 by yaseminbridges
@souzadevinicius
1
Disease prioritization results benchmarking from different disease ontologies
#349 opened Aug 9, 2024 by AO33
@yaseminbridges
5
Problems using pheval
#347 opened Jul 15, 2024 by seoanezonjic
@souzadevinicius @yaseminbridges
16
SOP for pheval releases
#341 opened Jun 13, 2024 by matentzn
@souzadevinicius
Add synthetic corpus
#339 opened Jun 12, 2024 by yaseminbridges
1
@yaseminbridges
Implement a PhEval Utils method for SEMSIM to SQL conversion
#296 opened Feb 8, 2024 by souzadevinicius
@souzadevinicius
Doc page: How to create a new PhEval release
#270 opened Jan 3, 2024 by souzadevinicius
@souzadevinicius
Create pheval.experimental runner for cross species testing
#207 opened Nov 1, 2023 by matentzn
@kcortes133
Test the WNATO hypothesis
#206 opened Nov 1, 2023 by matentzn
3 tasks
@souzadevinicius @kcortes133
1
Semsim comparison Heatmap plot should have a second parameter "-t/--terms" which allows restricting to specific terms for the heatmap.
#189 opened Aug 16, 2023 by souzadevinicius
@souzadevinicius
Create new pheval-utils function to generate semsim score distribution plots
#187 opened Aug 16, 2023 by souzadevinicius
1
@souzadevinicius
1
Please manage PhEval board
#174 opened Jul 4, 2023 by matentzn
4 of 6 tasks
@souzadevinicius @yaseminbridges
OntoGPT corpus to corpora
#156 opened Jun 13, 2023 by souzadevinicius
2 tasks
@souzadevinicius
Test Phenomizer or Exomiser-minus-variants on phenopackets
#155 opened Jun 12, 2023 by souzadevinicius
2 tasks
@souzadevinicius @yaseminbridges
Implementing pairwise agreement stats
#44 opened Jan 20, 2023 by yaseminbridges
2 tasks
@yaseminbridges
Make community standards all green
#41 opened Jan 10, 2023 by souzadevinicius
@souzadevinicius
Create a generic LinkML model for VP results
#36 opened Dec 1, 2022 by matentzn
@matentzn
Provide list of current Variant Prioritisation tools that might be suitable for PhEval long term
#35 opened Dec 1, 2022 by matentzn
@yaseminbridges
Study the impact of HPO versions on variant prioritisation performance use case
#31 opened Nov 24, 2022 by matentzn
Create style guide for CLI
#23 opened Nov 17, 2022 by matentzn
COnsider masking
#9 opened Oct 7, 2022 by matentzn
Document the key metrics from the exomiser outputs to track
#8 opened Oct 6, 2022 by matentzn
ProTip! What’s not been updated in a month: updated:<2024-10-10.