Change master to main in docs and workflows #137
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| name: Build and Test | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| - "staging" | |
| pull_request: | |
| branches: | |
| - "*" | |
| env: | |
| PROGRAM_NAME: pasv | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - macos-11 | |
| - ubuntu-20.04 | |
| ocaml-compiler: | |
| - 4.14.1 | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - run: echo "LOCAL_PATH=$HOME/.local/bin" >> $GITHUB_ENV | |
| - run: echo "CLUSTALO_EXE=$LOCAL_PATH/clustalo" >> $GITHUB_ENV | |
| - name: Setup path | |
| run: | | |
| mkdir -p "$LOCAL_PATH" | |
| echo "$LOCAL_PATH" >> $GITHUB_PATH | |
| - name: Download Clustal Omega (Linux) | |
| run: | | |
| \curl -L http://www.clustal.org/omega/clustalo-1.2.4-Ubuntu-x86_64 > "$CLUSTALO_EXE" | |
| if: matrix.os == 'ubuntu-20.04' | |
| - name: Download Clustal Omega (MacOS) | |
| # 1.2.4 isn't available for MacOS | |
| run: | | |
| \curl -L http://www.clustal.org/omega/clustal-omega-1.2.3-macosx > "$CLUSTALO_EXE" | |
| if: matrix.os == 'macos-11' | |
| - name: Setup and check Clustal Omega | |
| run: | | |
| chmod 755 "$CLUSTALO_EXE" | |
| clustalo --version | |
| - name: Download MAFFT | |
| run: | | |
| \curl -L https://mafft.cbrc.jp/alignment/software/mafft-7.481-without-extensions-src.tgz \ | |
| | tar xz | |
| - name: Install MAFFT | |
| run: cd mafft-*/core/ && make clean && make && sudo make install | |
| - name: Download HMMER | |
| run: \curl -L http://eddylab.org/software/hmmer/hmmer-3.3.2.tar.gz | tar xz | |
| - name: Install HMMER | |
| run: cd hmmer-3.3.2 && ./configure && make && sudo make install | |
| - name: Use OCaml ${{ matrix.ocaml-compiler }} | |
| uses: ocaml/setup-ocaml@v2 | |
| with: | |
| ocaml-compiler: ${{ matrix.ocaml-compiler }} | |
| dune-cache: ${{ matrix.os != 'macos-11' }} | |
| cache-prefix: v1-${{ matrix.os }} | |
| - name: Install OCaml deps (Ubuntu) | |
| run: opam update && opam install --locked . --deps-only --with-doc --with-test | |
| if: matrix.os == 'ubuntu-20.04' | |
| - name: Install OCaml deps (MacOS) | |
| run: opam update && opam install --locked . --jobs 1 --deps-only --with-doc --with-test | |
| if: matrix.os == 'macos-11' | |
| - name: Test (Ubuntu) | |
| run: opam exec -- make test | |
| if: matrix.os == 'ubuntu-20.04' | |
| - name: Test (MacOS) | |
| run: opam exec -- make test_mac | |
| if: matrix.os == 'macos-11' | |
| - run: opam exec -- make send_coverage | |
| if: matrix.ocaml-compiler == '4.12.0' | |
| env: | |
| COVERALLS_REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build (Ubuntu) | |
| run: opam exec -- make build_release | |
| if: matrix.os == 'ubuntu-20.04' | |
| - name: Build (MacOS) | |
| run: opam exec -- make build_release_mac | |
| if: matrix.os == 'macos-11' | |
| - name: Upload the build artifact | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: ${{ matrix.os }}-${{ matrix.ocaml-compiler }}-${{ env.PROGRAM_NAME }} | |
| path: _build/install/default/bin/${{ env.PROGRAM_NAME }} |