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PH-soil-networks-2019

Analyses of plant-herbivore ecological networks from serpentine and non-serpentine soils. Per-species abundance and H' analyses; plant resistance & interaction strength; empirical networks / subsampled and resampled networks / 'null' networks

Data

  • 2014-2015_network.csv
  • plants.csv
  • soil.csv
  • plant.traits_RI.csv

Randomization outputs

Resampling / calculating modularity takes a long time to run. These are the outputs from script (5) used in MS. Script (6) describes each file.

  • emp_q&q_max.csv
  • Q_from.subsampling.csv
  • NormalizedQ_from.subsampling.csv

Script name followed by contents

  1. Abundance of generalists & specialists across soils.R

    • Figure 2A
    • Table S5

  2. H' of generalists across soils.R

    • Figure 2B
    • Figure S3 & S4
    • Table S6 & S7

  3. Sampling completeness.R

    • Table S4

  4. Bipartite networks.R

    • Figure 3
    • Figure S5

  5. Modularity_empirical.rarefied.R

    • Table S8

  6. Modularity_figures.R

    • Figure S6

  7. Null models.R

    • Figure S7
    • Table S9

  8. Plant RI & Generalist IS.R

    • Figure S8
    • Table S10